View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_high_17 (Length: 247)
Name: NF4074_high_17
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17735984 - 17735757
Alignment:
| Q |
1 |
tatcaaattattatgtctctgctaatgattgcacccaagtgaacagaaaaacacaaggaagtgtgtaaaataagatcttttaagaacaactctaaactgg |
100 |
Q |
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| T |
17735984 |
tatcaaatgattatgtctctgctaatgattgcacccaagtgaacagaaaaacacaaggaagtgtgtaaaataagat-----------aactctaaactgg |
17735896 |
T |
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| Q |
101 |
gcaagtttgagtgacgcaatagtgcaatacaaatttatggaaggatttatcaatttgtaaatttctgagactagtttgatatatgcttaaaacatgttga |
200 |
Q |
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| T |
17735895 |
g-aagtttgagttgctcaatagtgcaatacaaatttatggatggatttatcaatttgtaaatttctgagactagtttgatatatgcttgaaacatgttga |
17735797 |
T |
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| Q |
201 |
agtgaccgtattgttctgtatattttactgatgctctgtg |
240 |
Q |
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| T |
17735796 |
agtgaccgtattgttctgtatattttacggatgttctgtg |
17735757 |
T |
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