View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_high_2 (Length: 583)
Name: NF4074_high_2
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 146 - 573
Target Start/End: Complemental strand, 36169308 - 36168893
Alignment:
| Q |
146 |
aaagactcgtacagtgttcattaccccatgttgtatgtccttcaaacttgccaaatgctactaccaataaaaaaccttccaatttctttcctacacgacg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36169308 |
aaagactcgtacagtgttcattaccccatgt---atgtccttcaaacttgccaaatgctactaccaataaaaaaccttccaatttctttcctacacgacg |
36169212 |
T |
|
| Q |
246 |
ctctttaaacttcaaacttgtttttaataatttaagaaaattaaatttatactctcctcaagggaatgcatgatgtgtttattaatcttgatcgtcaatc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36169211 |
ctctttaaacttcaaacttgtttttaataatttaagaaaatgaaatttatactctcctcaagggaatgcatgatgtgtttattaatcttgatcgtcaatc |
36169112 |
T |
|
| Q |
346 |
tccaatcaataataaaaattatttaaattattccccaatttatggtatatgtatttttggaaaatatcctaaacttataagaaaaatgctatgtttagca |
445 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36169111 |
tcaaatcaataataaaaat---------tattccccaatttatggtatatgtatttttggaaaatatcctaaacttataagaaaaatgctatgtttagca |
36169021 |
T |
|
| Q |
446 |
g-nnnnnnnnttcactacaatacgatgtgtatttcatttacctattatcgttgctatctatgatttccactaattccatatattttatcgtaataccatt |
544 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36169020 |
gaaaaaaaaattcactacaatacgatgtgtatttcatttacctattatcgttgctatctatgatttccactaattccatatattttgtcgtaataccatt |
36168921 |
T |
|
| Q |
545 |
ttaactaatgaaacaacttttatgatgat |
573 |
Q |
| |
|
|||||| |||||||| ||||||||||| |
|
|
| T |
36168920 |
ttaact-atgaaacacgctttatgatgat |
36168893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 36169436 - 36169365
Alignment:
| Q |
18 |
ttgttttaatttggattttgtgatggaatgagagtgacttttctcctataattctggccagcaaaatccttg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36169436 |
ttgttttaatttggattttgtgatggaatgagagtgacttttctcctataattctggccagcaaaatccttg |
36169365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 6625275 - 6625224
Alignment:
| Q |
469 |
atgtgtatttcatttacctattatcgttgctatctatgatttccactaattc |
520 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
6625275 |
atgtgtatttcagttacctattatcagtgctacctctgatttccactaattc |
6625224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University