View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_high_3 (Length: 449)
Name: NF4074_high_3
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 35508771 - 35508336
Alignment:
| Q |
1 |
gtttcgctccaacttaagcgtctaagttcaccgtcagttttcaatttatctttcaagctacccttaagtttcttattttggattgttattatacttttgt |
100 |
Q |
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| T |
35508771 |
gtttcgctccaacttaagcgtctaagttcaccgtcagttttcaatttatctttcaagctacccttaagtttcttattttggattgttattatacttttgt |
35508672 |
T |
|
| Q |
101 |
aatccggtgaacactcttgaaataatcttcgatgacatccatatttacccgcgtctccctcatcgctatcacttccattctgataaacacnnnnnnnn-t |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
35508671 |
aatccggtgaacactcttgaaataatcttcgatgacatccatatttacctgcgtctccctcatcgctatcacttccattctgataaacacaaaaaaaaat |
35508572 |
T |
|
| Q |
200 |
tgtaacacaagcacggaaaccttattaatagtacttcaagagtacataaaaaataatgtattgctagcatttctcaccgcactattaatctccacttcaa |
299 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35508571 |
tgtaacacaagcacgcaaaccttattaatagtacttcaagagtacataaaaaataatgtattgctagcatttctcaccgcactattaatctccacttcaa |
35508472 |
T |
|
| Q |
300 |
ctgtagaatctggcgattcctttcccgatgattcttcttctgatgattcactaattccatctagagcatgatagttgccgttgtccttgatccggttgga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35508471 |
ctgtagaatctggcgattcctttcccgatgattcttcttctgatgattcactaattccatctagagcatgatagttgccgttgtccttgatccggttgga |
35508372 |
T |
|
| Q |
400 |
cttaaaatgttctttcggaggttttgttgatataat |
435 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35508371 |
cttaaaatgttctttcggaggttttgttgatataat |
35508336 |
T |
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