View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_high_4 (Length: 427)
Name: NF4074_high_4
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 35509041 - 35509297
Alignment:
| Q |
1 |
cctgctttcgatgttttcggaaatgcttcctttcaaattagctttcattttctctctatcacaattaaaaaggaaaatttgtagcaaaatgtcatttt-g |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
35509041 |
cctgctttcgatgttttcggaaatgctttctttcaaattagctttcattttctctctatcacaattaaaaaggaaaatttgtaacaaaatgtcatttttg |
35509140 |
T |
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| Q |
100 |
gtttgaccacccacatatagagtaaaaattgaaaatgttgttagaaagtggtgtttcttttcatggaaatggaataatagtgggagctttttgaaacctg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35509141 |
gtttgaccacccacatatagagtaaaaattgaaaatgttgttagaaagtggtgtttcttttcatggaaatggaatgatagtgggagctttttgaaacctg |
35509240 |
T |
|
| Q |
200 |
agtcacatcattcagctgttttctgatgtggagcaatctagtatgcatgtcagcatg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35509241 |
agtcacatcattcagctgttttctgatgtggagcaatctagtatgcatgtcagcatg |
35509297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 35509294 - 35509433
Alignment:
| Q |
276 |
catgaaatttttgctaccaagagattggtgaataatgtggcagtgacactttagattgaaggcgtgtcggtgtataacatcaacacatggtgtactccca |
375 |
Q |
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| T |
35509294 |
catgaaatttttgctaccaagagattggtgaataatgtggcagtgacactttagattgaaggcgcgtcggtgtataacatcaacacatggtgtactccca |
35509393 |
T |
|
| Q |
376 |
ttcaattacttctactttttcaaattattattggtgtctg |
415 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| |
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| T |
35509394 |
ttcaatgacttctactttttcaaattattatcggtgtctg |
35509433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 39153939 - 39153981
Alignment:
| Q |
106 |
ccacccacatatagagtaaaaattgaaaatgttgttagaaagt |
148 |
Q |
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| T |
39153939 |
ccacccacatataaagtaaaaattgaaaatattgttagaaagt |
39153981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 48362821 - 48362863
Alignment:
| Q |
106 |
ccacccacatatagagtaaaaattgaaaatgttgttagaaagt |
148 |
Q |
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| T |
48362821 |
ccacccacctataaagtgaaaattgaaaatgttgttagaaagt |
48362863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 48362736 - 48362800
Alignment:
| Q |
12 |
tgttttcggaaatgcttcctttcaaattagctttcattttctctctatcacaattaaaaaggaaa |
76 |
Q |
| |
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||||||| ||||||| | || || | ||||||| ||| |||||||||||||||||||| |||||| |
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| T |
48362736 |
tgttttcagaaatgcattctctctagttagcttccatcttctctctatcacaattaaagaggaaa |
48362800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 28183797 - 28183764
Alignment:
| Q |
383 |
acttctactttttcaaattattattggtgtctgt |
416 |
Q |
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| T |
28183797 |
acttctactttatcaaattattattggtgtctgt |
28183764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 44643262 - 44643234
Alignment:
| Q |
120 |
agtaaaaattgaaaatgttgttagaaagt |
148 |
Q |
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| T |
44643262 |
agtaaaaattgaaaatgttgttagaaagt |
44643234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 10666640 - 10666680
Alignment:
| Q |
374 |
cattcaattacttctactttttcaaattattattggtgtct |
414 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
10666640 |
cattcaattacttctattttctcaaattattattagtgtct |
10666680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 44800840 - 44800868
Alignment:
| Q |
120 |
agtaaaaattgaaaatgttgttagaaagt |
148 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44800840 |
agtaaaaattgaaaatgttgttagaaagt |
44800868 |
T |
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