View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4074_high_6 (Length: 355)

Name: NF4074_high_6
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4074_high_6
NF4074_high_6
[»] chr1 (9 HSPs)
chr1 (72-351)||(42146334-42146613)
chr1 (17-61)||(42146633-42146677)
chr1 (296-346)||(2994782-2994832)
chr1 (305-346)||(3886686-3886727)
chr1 (302-355)||(32923833-32923886)
chr1 (302-355)||(45701343-45701396)
chr1 (302-355)||(51046157-51046210)
chr1 (315-355)||(2817379-2817419)
chr1 (312-348)||(15382822-15382858)
[»] chr5 (5 HSPs)
chr5 (291-346)||(32806383-32806438)
chr5 (309-354)||(2143149-2143194)
chr5 (302-346)||(8544982-8545026)
chr5 (290-355)||(4622324-4622389)
chr5 (291-355)||(26409268-26409332)
[»] chr6 (2 HSPs)
chr6 (302-355)||(9665325-9665378)
chr6 (291-355)||(10053265-10053329)
[»] chr8 (11 HSPs)
chr8 (310-355)||(9070973-9071018)
chr8 (302-346)||(574408-574452)
chr8 (311-355)||(44019564-44019608)
chr8 (296-346)||(27718881-27718931)
chr8 (302-355)||(11709001-11709054)
chr8 (302-347)||(28436540-28436585)
chr8 (311-355)||(8078102-8078146)
chr8 (302-346)||(11040412-11040456)
chr8 (302-346)||(21557457-21557501)
chr8 (302-346)||(29293201-29293245)
chr8 (311-355)||(36919326-36919370)
[»] chr4 (8 HSPs)
chr4 (303-355)||(40070962-40071014)
chr4 (302-346)||(45343805-45343849)
chr4 (302-344)||(49491214-49491256)
chr4 (302-355)||(18004480-18004533)
chr4 (302-355)||(42344611-42344664)
chr4 (311-355)||(7190450-7190494)
chr4 (302-346)||(31041709-31041753)
chr4 (315-355)||(50380842-50380882)
[»] chr3 (5 HSPs)
chr3 (302-346)||(7829920-7829964)
chr3 (302-355)||(28430558-28430611)
chr3 (300-348)||(24348409-24348457)
chr3 (302-346)||(33633311-33633355)
chr3 (302-354)||(42074119-42074171)
[»] chr2 (5 HSPs)
chr2 (291-346)||(28202321-28202376)
chr2 (302-355)||(20644019-20644072)
chr2 (302-346)||(4238783-4238827)
chr2 (312-348)||(12893247-12893283)
chr2 (302-346)||(33064010-33064054)
[»] chr7 (6 HSPs)
chr7 (302-347)||(36032955-36033000)
chr7 (291-355)||(31885927-31885991)
chr7 (302-346)||(42227798-42227842)
chr7 (291-339)||(44106659-44106707)
chr7 (302-346)||(44868148-44868192)
chr7 (302-346)||(47342427-47342471)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 72 - 351
Target Start/End: Complemental strand, 42146613 - 42146334
Alignment:
Q  72 attttacacctctaatttaccacccattatttttcacatgttgaggagtgaaatcacttataatgggtgataaatcacnnnnnnnagagggcgatgataa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||    
T  42146613 attttacacctctaatttaccacccattatttttcacatgttgaggagtgaaatcacttataatgggtgataaatcactttttttagagggcggtgataa 42146514  T
Q  172 ataacttgcaacattgcataaaactcggtagattccacaaaaataactgttgaaaatgatcttagatgacagaaatatatcaaattgtgacacaacatgc 271  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42146513 ataacttgtaacattgcataaaactcggtagattccacaaaaataactattgaaaatgatcttagatgacataaatatatcaaattgtgacacaacatgc 42146414  T
Q  272 ttggttgttggtggtagtcttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgttcgta 351  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| ||| ||||||    
T  42146413 ttggatgttggtggtagtcttttattttttgtggccggagttcgaactccgaaccttgcatatattatatattattcgta 42146334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 42146677 - 42146633
Alignment:
Q  17 tcatttggtggcattacataagtacgtaaatcatcttccaaaatg 61  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
T  42146677 tcatttgatggcatttcataagtacgtaaatcatcttccaaaatg 42146633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 2994832 - 2994782
Alignment:
Q  296 ttttttgtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||||| ||| ||||  |||||||| |||||||||||||||||    
T  2994832 ttttttgtggtcggggtttgaaccccggaccttgcatatattatacattgt 2994782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 3886686 - 3886727
Alignment:
Q  305 gtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||||||||||| |||| |||| ||||||||||||||||    
T  3886686 gtcggagttcgaactccggatcttatatatattatacattgt 3886727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 32923886 - 32923833
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||| ||||||| |||||| |||||||||| |||||| | ||||||    
T  32923886 gtggtcggagtttgaacttcagacctttcatatattatgcattgtccctaccaa 32923833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 45701396 - 45701343
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||||||| |||||||| | |||||||||||| |||| |||||||| ||||||    
T  45701396 gtggtcggaattcgaactccagaccttacatattttatgcattgttcataccaa 45701343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 51046210 - 51046157
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||||||||| || ||||||||||| ||||  ||||||| ||||||    
T  51046210 gtggtcggagttcgaactccgaaccttacatattttatgtattgttcataccaa 51046157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 2817379 - 2817419
Alignment:
Q  315 gaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||||||||||||||||||||||| |||||| | ||||||    
T  2817379 gaacttcggaccttacatatattatgcattgtccttaccaa 2817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 15382822 - 15382858
Alignment:
Q  312 ttcgaacttcggaccttacatatattatacattgttc 348  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  15382822 ttcgaacctcggaccttgcatatattatacattgttc 15382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 32806438 - 32806383
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||    
T  32806438 ttttattttttgtgcccggagttcgaacttcggaccttgcatatattatgcattgt 32806383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 2143194 - 2143149
Alignment:
Q  309 gagttcgaacttcggaccttacatatattatacattgttcgtacca 354  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||    
T  2143194 gagtttgaacttcggaccttgcatatattatacattgttcctacca 2143149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 8544982 - 8545026
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||    
T  8544982 gtggtcggagttcgaactccggaccttgcatatattatgcattgt 8545026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 4622324 - 4622389
Alignment:
Q  290 cttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||| |||||||||||||| |||| |||| | ||| ||||||||||||| |||||| | ||||||    
T  4622324 ctttttttttttgtggtcggcgttcaaactccagactttacatatattatgcattgtccttaccaa 4622389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 26409332 - 26409268
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||| ||||| |||| ||| ||||||||  ||||||||||||||||||| |||||| | ||||||    
T  26409332 ttttttttttggtgggcggggttcgaaccccggaccttacatatattatgcattgtccataccaa 26409268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 9665378 - 9665325
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  9665378 gtggtcggagttcgaaccccggaccttacatatattatatattgttcataccaa 9665325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 10053329 - 10053265
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||| |||||| ||||| ||||| || || ||||||||||||| |||||| | ||||||    
T  10053329 ttttatttttggtggtctgagtttgaactccgaactttacatatattatgcattgtccataccaa 10053265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 9071018 - 9070973
Alignment:
Q  310 agttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||    
T  9071018 agttcgaacctcggaccttacatatattatacattgtccttaccaa 9070973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 574452 - 574408
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  574452 gtggtcgaagttcgaactccggaccttacatatattatgcattgt 574408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 44019608 - 44019564
Alignment:
Q  311 gttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||    
T  44019608 gttcgaacttcggaccttgcatatattatgcattgttcttaccaa 44019564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 27718881 - 27718931
Alignment:
Q  296 ttttttgtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||| ||||||    
T  27718881 tttttggtggtcggagtttgaactccggaccttgcatatattatgcattgt 27718931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 11709054 - 11709001
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||| ||| |||||||||||||| |||||||||| |||||| | ||||||    
T  11709054 gtggtcggggtttgaacttcggaccttgcatatattatgcattgtccctaccaa 11709001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 28436540 - 28436585
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgtt 347  Q
    |||||||||||| |||||| |||| ||||||||||||| |||||||    
T  28436540 gtggtcggagtttgaactttggactttacatatattatgcattgtt 28436585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 8078102 - 8078146
Alignment:
Q  311 gttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||| || ||||||||||||||||| |||||||| ||||||    
T  8078102 gttcgaacatcagaccttacatatattatgcattgttcttaccaa 8078146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 11040412 - 11040456
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||| ||| |||||||||||||||||||| |||| ||||||    
T  11040412 gtggtcggggtttgaacttcggaccttacatattttatgcattgt 11040456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 21557501 - 21557457
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||||  ||||||| |||||||||||||||||||| ||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgt 21557457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 29293245 - 29293201
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||| ||||||| ||||| |||||||||||||||||||| |||||    
T  29293245 gtggccggagtttgaactccggaccttacatatattatatattgt 29293201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 36919370 - 36919326
Alignment:
Q  311 gttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||| | | ||||||||||||||||||||||||| ||||||    
T  36919370 gttcgaaccttgaaccttacatatattatacattgttcttaccaa 36919326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 40070962 - 40071014
Alignment:
Q  303 tggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||||| ||| |||||||||||||| |||||||||| |||||||| ||||||    
T  40070962 tggtcggggtttgaacttcggaccttgcatatattatgcattgttcataccaa 40071014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 45343805 - 45343849
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||    
T  45343805 gtggttggagttcgaaccccggaccttacatatattatacattgt 45343849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 49491256 - 49491214
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacatt 344  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||    
T  49491256 gtggtcggagtttgaactccggactttacatatattatacatt 49491214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 18004533 - 18004480
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||| |||| ||||| |||||||||||||| |||| ||| ||||||    
T  18004533 gtggtcggagtttgaacgtcggatcttacatatattatgcattattcttaccaa 18004480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 42344611 - 42344664
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||  ||| |||| ||||||||| ||||||||||||||||||| ||||||    
T  42344611 gtggtcgatgtttgaacctcggaccttgcatatattatacattgttcctaccaa 42344664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 7190450 - 7190494
Alignment:
Q  311 gttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||||||| ||||| ||||||||||||| |||||||| ||||||    
T  7190450 gttcgaactccggacgttacatatattatgcattgttcttaccaa 7190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 31041709 - 31041753
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||||||||  ||||| || |||||||||||||||||    
T  31041709 gtggtcggagttcgaaccccggacattgcatatattatacattgt 31041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 50380842 - 50380882
Alignment:
Q  315 gaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    ||||| ||||||||||||||||||| |||||||| ||||||    
T  50380842 gaactccggaccttacatatattatgcattgttcataccaa 50380882  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 7829964 - 7829920
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  7829964 gtggtcggatttcgaacttcagaccttacatatattatgcattgt 7829920  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 28430558 - 28430611
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||| ||||| |||| || |||||| |||||||||| |||||||||||||||    
T  28430558 gtggtcagagtttgaacctcagaccttgcatatattatgcattgttcgtaccaa 28430611  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 24348457 - 24348409
Alignment:
Q  300 ttgtggtcggagttcgaacttcggaccttacatatattatacattgttc 348  Q
    |||||||||||||| |||| || |||||| |||||||||| ||||||||    
T  24348457 ttgtggtcggagtttgaacctctgaccttgcatatattatgcattgttc 24348409  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 33633311 - 33633355
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||| ||||||||||| |||| |||||||||||||| ||||||    
T  33633311 gtggtcagagttcgaactccggatcttacatatattatgcattgt 33633355  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 42074171 - 42074119
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtacca 354  Q
    |||| |||||||||||| || |||||| |||||||||| |||||||| |||||    
T  42074171 gtggccggagttcgaacctcagaccttgcatatattatgcattgttcatacca 42074119  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 28202376 - 28202321
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||| ||||||||| | || ||| ||||||||||||||||||||||||| ||||||    
T  28202376 tttttttttttgtgattggggtttgaacttcggaccttacatatattatgcattgt 28202321  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 20644072 - 20644019
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||||||||||| |||| ||||| |||||||||||||| |||| ||| ||||||    
T  20644072 gtggtcggagtttgaacgtcggatcttacatatattatgcattattcttaccaa 20644019  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 4238827 - 4238783
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||||||||  || |||||||||||||||| ||||||    
T  4238827 gtggtcggagttcgaaccccgaaccttacatatattatgcattgt 4238783  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 12893247 - 12893283
Alignment:
Q  312 ttcgaacttcggaccttacatatattatacattgttc 348  Q
    ||||||| | |||||||||||||||||||||||||||    
T  12893247 ttcgaaccttggaccttacatatattatacattgttc 12893283  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 33064054 - 33064010
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||| ||||||||||||| |||||||| |||||||||| ||||||    
T  33064054 gtggccggagttcgaactccggaccttgcatatattatgcattgt 33064010  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 36033000 - 36032955
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgtt 347  Q
    ||||||||||||| || |||| ||||| ||||||||||||||||||    
T  36033000 gtggtcggagttcaaatttcgaaccttgcatatattatacattgtt 36032955  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 31885927 - 31885991
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattatacattgttcgtaccaa 355  Q
    |||| ||||| || ||||||||||||| | | || |||||||||||||| |||||||| ||||||    
T  31885927 ttttttttttggtagtcggagttcgaattccagatcttacatatattatgcattgttcataccaa 31885991  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 42227798 - 42227842
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||| |||| ||| |||||||||||||||| ||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgt 42227842  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 44106707 - 44106659
Alignment:
Q  291 ttttattttttgtggtcggagttcgaacttcggaccttacatatattat 339  Q
    |||| ||||||||| ||||||||||||| |||||| || ||||||||||    
T  44106707 tttttttttttgtgatcggagttcgaacctcggactttgcatatattat 44106659  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 44868148 - 44868192
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    ||||||||| || |||| |||||||||||||||||||| ||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgt 44868192  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 47342427 - 47342471
Alignment:
Q  302 gtggtcggagttcgaacttcggaccttacatatattatacattgt 346  Q
    |||||||||||| ||||| |||||||| |||||||||| ||||||    
T  47342427 gtggtcggagtttgaactccggaccttgcatatattatgcattgt 47342471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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