View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_high_7 (Length: 352)
Name: NF4074_high_7
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 111 - 334
Target Start/End: Original strand, 17736084 - 17736303
Alignment:
| Q |
111 |
aagtaataatcttcttcttcccggaggtaatctttataacgannnnnnnnngttgcagaatatgacaaaacatgaatcctacgctaaggaaaggatttgc |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736084 |
aagtaaaaatcttcttcttcccggaggtaatctttataacgatttttt----ttgcagaatatgacaaaacatgaatcctacgctaaggaaaggatttgc |
17736179 |
T |
|
| Q |
211 |
ataagattaggaaaagataaatcatagacttatagtacatgatttatattgaatttaatttaggtggattcaacacgccccctctagatagagttacacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736180 |
gtaagattaggaaaagataaatcatagactcatagtacatgatttatattgaatttaatttaggtggattcaacacgccccctctagatagagttacacc |
17736279 |
T |
|
| Q |
311 |
aggtaacatttatcttggtaagta |
334 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
17736280 |
aggtaacatttatcttggtaagta |
17736303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 17735962 - 17736073
Alignment:
| Q |
12 |
agcagagacataataatttgatatcaagtgccaatttgtattttgataccaaatataataattaatctattgggtccacatttatttacttacgtgatca |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17735962 |
agcagagacataatcatttgatatcaagtggcaatttgtattttgataccaaatataataattaatctattgggtccacatttatttacttacgtgatca |
17736061 |
T |
|
| Q |
112 |
agtaataatctt |
123 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17736062 |
agtaataatctt |
17736073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University