View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_low_10 (Length: 334)
Name: NF4074_low_10
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 42146309 - 42145993
Alignment:
| Q |
1 |
cggtagtagccttgtcg-tgtggttagtgagaagcaaaataaacgttagtggtgatttataaatcatacaagtagaaagtccgggcaggacatacgcaga |
99 |
Q |
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| T |
42146309 |
cggtggtagtcttgtcgctgtggttagtgagaagcaaaataaaagttagtggtgatttataaatcatacaagtagaaattatgggcaggacatacgcaga |
42146210 |
T |
|
| Q |
100 |
ttgacgggctaatgtgattcaaggcccatttgtttnnnnnnnnnnnntttagaagaacatttgtttaaaattcttgagaaaatacttttgattaatttat |
199 |
Q |
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|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42146209 |
ttgatagggtaatgtgattcaaggcccatttgttttaaaaataaaaatttagaagaacatttgtttaaaattcttgagaaaatacttttgattaatttat |
42146110 |
T |
|
| Q |
200 |
ttaagtttgtttgtgtgtatttgtgagtgtaccgtagaagtttcttatatttaaacactannnnnnnnnatgaaaaaataattataagagcacgttgtga |
299 |
Q |
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| T |
42146109 |
ttaagcttgtttgtgtgtacttgtgagtgtaccttagaagtttcctatatttaaacacta--tttttttatgaaaaaataattataagagcacgttgtga |
42146012 |
T |
|
| Q |
300 |
cctcatctccgccgttcat |
318 |
Q |
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||||||||||||||||||| |
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| T |
42146011 |
cctcatctccgccgttcat |
42145993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 38329476 - 38329443
Alignment:
| Q |
219 |
tttgtgagtgtaccgtagaagtttcttatattta |
252 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
38329476 |
tttgtgagtgtaccgtagaagttccttatattta |
38329443 |
T |
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