View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_low_11 (Length: 334)
Name: NF4074_low_11
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 36281830 - 36282044
Alignment:
| Q |
2 |
aaataacgacacttttagaggcataactttataccaaattatgtgtgacagaatatcaaagttagaatgttcaactctagtaagattctgataagcacca |
101 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
36281830 |
aaataacgatacttttaaaggcataactttataccaaattatgtgtgacagaatatcaaagttggaatattcaactctagtaagaatctgataagcaccc |
36281929 |
T |
|
| Q |
102 |
tttaccaaataaccatcaatggagttttataaccaaactcgtttagttgtcacattgtcctgcnnnnnnnnntgttatttaacaaagaaacacattgttc |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
36281930 |
tttaccaaataaccatcaatgaagttttataaccaaactcgtttatctgtcacgttgtcctgc--aaaaaaatgatatttaacaaagaaccacattgttt |
36282027 |
T |
|
| Q |
202 |
catttaatcctctccca |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36282028 |
catttaatcctctccca |
36282044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 36282071 - 36282164
Alignment:
| Q |
245 |
cctctccaccgccatcatgcctctccacccccaacctagcctcttcatcacagc-----taacactcctttcaacacagagctcaaatagtcat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
36282071 |
cctctccaccgccatcatgcctctccacccccaacatagcctcttcatctcagctatagtaacactgctttcaacacaaagctcaaatagtcat |
36282164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 32661749 - 32661787
Alignment:
| Q |
174 |
tgttatttaacaaagaaacacattgttccatttaatcct |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32661749 |
tgttatctaacaaagaaacacattgttccaattaatcct |
32661787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University