View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_low_13 (Length: 318)
Name: NF4074_low_13
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 3285736 - 3285903
Alignment:
| Q |
1 |
ttttctgatcggagactcaacggcacgacggttccggcgaagattaggaaacaaagcttgtgaagaaggtgcaagaaacctttcaaaaatggccatgagt |
100 |
Q |
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| T |
3285736 |
ttttctgatcggagactcaacggcacgacggttccggcgaagattaggaaacaaagcttgtgaagaaggtgcaagaaacctttcaaaaatggccatgagt |
3285835 |
T |
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| Q |
101 |
aagaacattgaaataagaacagcagtagcaacaaaaccaaaggagacagcattaacagaactatcaaa |
168 |
Q |
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| T |
3285836 |
aagaacattgaaataagaacagcagtagcaacaaaaccaaaggagacagcattaacagaactatcaaa |
3285903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 3285952 - 3286052
Alignment:
| Q |
214 |
atgatcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttcctagtaccattaccatctctgctcct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
3285952 |
atgatcatctctttgtacatttagtggggcccctattggactccaaccattctcaacaacatgctcctctgttccgagtaccattaccatcactgttcct |
3286051 |
T |
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| Q |
314 |
t |
314 |
Q |
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| T |
3286052 |
t |
3286052 |
T |
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