View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_low_14 (Length: 306)
Name: NF4074_low_14
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 29008789 - 29009075
Alignment:
| Q |
20 |
aagcccaaacctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaattgaagccaagac |
119 |
Q |
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| T |
29008789 |
aagcccaatcctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaatcgaagccaagac |
29008888 |
T |
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| Q |
120 |
gaccacgaacatagctttcactgcccagactggcctcattttcctannnnnnnnnnnnnnnnnnnnnnnncacagagttaactatagcttcgattcaaat |
219 |
Q |
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| T |
29008889 |
gaccacgaacatagctttcactgcccagactggcctcattttcctacaaatcaaaccaaaaaatcaaaaacacagagttaactatagcttcgattcaaat |
29008988 |
T |
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| Q |
220 |
tcttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaat |
306 |
Q |
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|||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29008989 |
tcttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaat |
29009075 |
T |
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