View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_low_15 (Length: 294)
Name: NF4074_low_15
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_15 |
 | |
|
| [»] scaffold0108 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 12416111 - 12416381
Alignment:
| Q |
17 |
aacatatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctatattga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12416111 |
aacatatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgtactatattga |
12416210 |
T |
|
| Q |
117 |
caattttgatgcattagctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaaattctacaatcat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12416211 |
caattttgatgcattagctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaagttctacaatcat |
12416310 |
T |
|
| Q |
217 |
attcactaattcttgctcattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12416311 |
attcactaattcttgctcattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
12416381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 18122429 - 18122360
Alignment:
| Q |
28 |
aaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaa |
97 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||| | ||| |||||| |||||||||| ||||||||| |
|
|
| T |
18122429 |
aaaggaagtacagactttattgggatcaattattatttttctctctttgttagacatgaaccaaatagaa |
18122360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 17051 - 17192
Alignment:
| Q |
20 |
atatgctcaaaggaagtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctatattgacaa |
119 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||||||||| ||| | ||||| ||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
17051 |
atatgatcaaaggaagtttagactttgtgggagtcaattattattattctgtttttgccagacatgaatcaaatagaagcaatatgttccctcttgacaa |
17150 |
T |
|
| Q |
120 |
ttttgatgcattagctgcaactacaggtaagctaatatttct |
161 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
17151 |
ttttgatgccttagctgcaactaatggtaagctaatatttct |
17192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 17241 - 17273
Alignment:
| Q |
239 |
tttcacaattgtagaatttaatgcagaaggaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17241 |
tttcacaattgtagaatttaatgcagaaggaaa |
17273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University