View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_low_18 (Length: 248)
Name: NF4074_low_18
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 51653222 - 51653466
Alignment:
| Q |
1 |
ttcttacactcactggtgtctatggcttctggaagcatgtgtctaacctcgaccgtcttgagagccgccgctatcttgagatgttctatgctctcaagta |
100 |
Q |
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| T |
51653222 |
ttcttacactcactggtgtctatggcttctggaagcatgtgtctaacctcgaccgtcttgagagccgccgctatcttgagatgttctatgctctcaagta |
51653321 |
T |
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| Q |
101 |
ccgcaaattggtaagttttatattagacgtatattttataagattgagttagactcgaaaactaatataaatatttttctatcaagttactaatcaatgc |
200 |
Q |
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| T |
51653322 |
ccgcaaattggtaagttttatattagacgtatattttataagattgagttagactcgaaaactaatataaatatttttctatcaagttactaatcaatgc |
51653421 |
T |
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| Q |
201 |
attttgttacatttttgtgtacctcaggctgagtctgtgctccta |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51653422 |
attttgttacatttttgtgtacctcaggctgagtctgtgccccta |
51653466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 19151922 - 19151820
Alignment:
| Q |
12 |
actggtgtctatggcttctggaagcatgtgtctaacctcgaccgtcttgagagccgccgctatcttgagatgttctatgctctcaagtaccgcaaattgg |
111 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| || || | ||||||| || || ||||||||||||||||| || |||||| ||||||||| |
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| T |
19151922 |
actggtgtttatggcttctggaagcatgtgactaaccttgatcgccgtgagagcaaacgttaccttgagatgttctatgcacttaagtacagcaaattgg |
19151823 |
T |
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| Q |
112 |
taa |
114 |
Q |
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||| |
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| T |
19151822 |
taa |
19151820 |
T |
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