View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_low_2 (Length: 675)
Name: NF4074_low_2
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 545
Target Start/End: Original strand, 29237168 - 29237694
Alignment:
| Q |
19 |
gcctcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaacggtatactcagctataactt |
118 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| |||||||||| ||||||| | |||||| | ||| | |
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| T |
29237168 |
gcctcttcctcactctgtccaccagacaagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaacggtgtgctcagcaacaacct |
29237267 |
T |
|
| Q |
119 |
cgggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatgatcgtttaaagctttgtagca |
218 |
Q |
| |
|
|||| | ||||||||| | ||| || |||||||| ||||||||||||||||| || |||||||| || || ||||| || || || || || |||||||| |
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|
| T |
29237268 |
cgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttcaaggaggacatggtggtcattcaaggccttgtagca |
29237367 |
T |
|
| Q |
219 |
tgcagctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccattttct |
318 |
Q |
| |
|
||| || || || || || || | |||||||| | |||||||||| |||||| || ||||| || ||||| || || || || | ||||| ||| |
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| T |
29237368 |
tgctgcaaggaccttctcggtaacagcagcacacttttgaatgtcatgaggtccatcaacaaggatctcaggctcaacaattggtacaagtccattctct |
29237467 |
T |
|
| Q |
319 |
tggcatatgacagcgtagcgagctagaccataggcgttctcgtggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttcg |
418 |
Q |
| |
|
||||||||||| || || || || | ||||||||| ||||||||||||| ||||||||||||| ||||| || || || || || |||||||| || | |
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| T |
29237468 |
tggcatatgactgcatatcgggccaaaccataggcattctcgtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttag |
29237567 |
T |
|
| Q |
419 |
cgaatcgggcgccagcttcatagtacttttggcaacactgaccgaggccatccaaaccttgggtggtggtttccccattggttccagctagctctacagt |
518 |
Q |
| |
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|||| || || ||||||||||||||||| |||| ||| || ||||| | ||| || ||||||||||| |||| ||||| || ||||| || || |
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| T |
29237568 |
cgaaacgtgcaccagcttcatagtacttagcacaacgagcaccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaacggt |
29237667 |
T |
|
| Q |
519 |
gcccttgtcaaccttaatgccaggaag |
545 |
Q |
| |
|
|||||||||||||| || |||||||| |
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|
| T |
29237668 |
acccttgtcaaccttgataccaggaag |
29237694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 545
Target Start/End: Original strand, 29233418 - 29233944
Alignment:
| Q |
19 |
gcctcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaacggtatactcagctataactt |
118 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||||| || || ||||| || ||||||| |||||||||| ||||||| | |||||| | ||| | |
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|
| T |
29233418 |
gcctcttcctcactctgttcaccagataagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaacggtgtgctcagcaacaacct |
29233517 |
T |
|
| Q |
119 |
cgggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatgatcgtttaaagctttgtagca |
218 |
Q |
| |
|
|||| | ||||||||| | ||| || |||||||| ||||||||||||||||| || |||||||| || || ||||| || || || | || |||||||| |
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|
| T |
29233518 |
cgggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttcaaggaggacatggtggtcattctaggccttgtagca |
29233617 |
T |
|
| Q |
219 |
tgcagctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccattttct |
318 |
Q |
| |
|
||| || || || || || || | |||||||| | |||||||||| |||||| || ||||| || ||||| || || || || | ||||| ||| |
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|
| T |
29233618 |
tgctgcaaggaccttctcggtaacagcagcacacttttgaatgtcatgaggtccatcaacaaggatctcaggctcaacaattggtacaagtccattctct |
29233717 |
T |
|
| Q |
319 |
tggcatatgacagcgtagcgagctagaccataggcgttctcgtggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttcg |
418 |
Q |
| |
|
||||||||||| || || || || | ||||||||| ||||||||||||| ||||||||||||| ||||| || || || || || |||||||| || | |
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|
| T |
29233718 |
tggcatatgactgcatatcgggccaaaccataggcattctcgtggatagagtgctcagatggctcattggggccgattttaagcactgcacgccatttag |
29233817 |
T |
|
| Q |
419 |
cgaatcgggcgccagcttcatagtacttttggcaacactgaccgaggccatccaaaccttgggtggtggtttccccattggttccagctagctctacagt |
518 |
Q |
| |
|
|||| || || ||||||||||||||||| |||| ||| || ||||| | ||| || ||||||||||| |||| ||||| || ||||| || || |
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|
| T |
29233818 |
cgaaacgtgcaccagcttcatagtacttagcacaacgagcaccaagtccatcaagaccctgagtggtggtttctccatcagttccggcaagctcaacggt |
29233917 |
T |
|
| Q |
519 |
gcccttgtcaaccttaatgccaggaag |
545 |
Q |
| |
|
|||||||||||||| || |||||||| |
|
|
| T |
29233918 |
acccttgtcaaccttgataccaggaag |
29233944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 42280404 - 42280349
Alignment:
| Q |
361 |
tggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccactt |
416 |
Q |
| |
|
||||||| || |||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
42280404 |
tggatagacaactcagagggctcattgggaccaatcttgaggaccgcacgccactt |
42280349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 42028177 - 42028065
Alignment:
| Q |
220 |
gcagctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccattttctt |
319 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||| |||| |
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|
| T |
42028177 |
gcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccattctctt |
42028078 |
T |
|
| Q |
320 |
ggcatatgacagc |
332 |
Q |
| |
|
||||||||||||| |
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|
| T |
42028077 |
ggcatatgacagc |
42028065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 402 - 507
Target Start/End: Complemental strand, 42028070 - 42027965
Alignment:
| Q |
402 |
gacagcacgccacttcgcgaatcgggcgccagcttcatagtacttttggcaacactgaccgaggccatccaaaccttgggtggtggtttccccattggtt |
501 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||||||| ||||||| |||||| || || ||||||||||| ||||||||||||||||||||| |
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|
| T |
42028070 |
gacagcacgccacttggcaaatcgggcaccagcttcatagtacttctggcaacgctgaccaagcccgtccaaaccttgagtggtggtttccccattggtt |
42027971 |
T |
|
| Q |
502 |
ccagct |
507 |
Q |
| |
|
|||||| |
|
|
| T |
42027970 |
ccagct |
42027965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 565
Target Start/End: Original strand, 26629589 - 26630132
Alignment:
| Q |
22 |
tcctcctcactctgtccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaacggtatactcagctataacttcgg |
121 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| || | ||||||||| || || |||||||||| | ||| ||| ||||| | | |||||||| || | |
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|
| T |
26629589 |
tcctcttcactttgtccaccagacaagaaaactatagcaggaaccgcggcaggaacggttctcaacaatgctcggacggtgtgttgggctataacctcag |
26629688 |
T |
|
| Q |
122 |
gggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatgatcgtttaaagctttgtagcatgc |
221 |
Q |
| |
|
| | ||| || ||||||||||| || || || ||||| |||||||||||||| || ||||| || ||||||||||| || ||| ||| ||||| ||||| |
|
|
| T |
26629689 |
gagcaactttaggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatgatggtcacttagagccttgtaacatgc |
26629788 |
T |
|
| Q |
222 |
agctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccattttcttgg |
321 |
Q |
| |
|
|| ||||| ||||| || || || || ||||| ||||| || | |||||| || || || || ||||| || || ||||| || ||||| ||||| |
|
|
| T |
26629789 |
tgcaagaacgcgttctgttacatcagcgcactttgcaatgtcgtggggtccatccactagaatctcaggctccacaattggaaccaaaccattctcttga |
26629888 |
T |
|
| Q |
322 |
catatgacagcgtagcgagctagaccataggcgttctcgtggatagccagctcagatggctcgttgggaccaatcttgaggacagcacgccacttcgcga |
421 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||| |||||||| | || |||||| || || ||||| ||||| || || || ||||| || || | |
|
|
| T |
26629889 |
catatgacggcgtaacgagctaaaccataggcgttttcgtggattgacaagggagatggttcatttggaccgatctttagcacggcgcgccatttagcaa |
26629988 |
T |
|
| Q |
422 |
atcgggcgccagcttcatagtacttttggcaacactgaccgaggccatccaaaccttgggtggtggtttccccattggttccagctagctctacagtgcc |
521 |
Q |
| |
|
| | || |||||||||||||| || | ||| | |||||| ||| ||||||||||||| || |||||||| || || || || || || || || || || |
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|
| T |
26629989 |
accttgcaccagcttcatagtatttcttgcacctctgaccaaggtcatccaaaccttgagttgtggtttctccgtttgtgccggcaagttcaacggttcc |
26630088 |
T |
|
| Q |
522 |
cttgtcaaccttaatgccaggaagaactcctccttccttcaaca |
565 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| |||||||| |
|
|
| T |
26630089 |
cttgtcaaccttgataccaggaagaactccagctttcttcaaca |
26630132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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