View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4074_low_6 (Length: 361)
Name: NF4074_low_6
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 3285518 - 3285347
Alignment:
| Q |
172 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagttatttcttctttcttgatctcttttcttaaagcctttaat |
271 |
Q |
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| T |
3285518 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagttatttcttctttcttgatctcttttcttaaagcctttaat |
3285419 |
T |
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| Q |
272 |
gtgtattttactgttccattattttaaggatgtgtgttcttctttgatccttgaatttgtcaaactttcata |
343 |
Q |
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| T |
3285418 |
gtgtattttactgttccattattttaaggatgtgtgttcttctttgatccttgaatttgtcaaactttcata |
3285347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 3285689 - 3285552
Alignment:
| Q |
1 |
ttttaaaaaatatgttttttatgtttcttgagatttttgtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgctttgttgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3285689 |
ttttaaaaaatatgttttttatgtttcttgagatttttgtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgttttgttgtt |
3285590 |
T |
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| Q |
101 |
tgtttctattggttgcttttacttctcatctaattaat |
138 |
Q |
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| T |
3285589 |
tgtttctataggttgcttttacttctcatcttattaat |
3285552 |
T |
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