View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4075_high_3 (Length: 239)
Name: NF4075_high_3
Description: NF4075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4075_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 475411 - 475637
Alignment:
| Q |
1 |
tcttgacaattcttgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475411 |
tcttaacaattcttgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatt |
475510 |
T |
|
| Q |
101 |
tgaacatt-acaacttaaattattaatctaattaactgatgcttatgcttcatgtgagttagcatgataggcgcaattggagtgatcattggcttgtatg |
199 |
Q |
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| T |
475511 |
tgaacatttacaacttaaattattaatctaattaactgatgcttatgcttcatgtgagttagcttgataggcgcaattggagtgatcattggcttgtatg |
475610 |
T |
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| Q |
200 |
tcgtgctttggggtaaagcggatgatg |
226 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
475611 |
tcgtgctttggggtaaagcggaagatg |
475637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 457781 - 457968
Alignment:
| Q |
32 |
cttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatttgaacattacaacttaaattattaatctaat |
131 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |
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| T |
457781 |
cttgctgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaatattaatttgaacattacaacttgaattattagtctaac |
457880 |
T |
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| Q |
132 |
taactgatgcttatgcttcatgtg-agttagcatgataggcgcaattggagtgatcattggcttgtatgtcgtgctttggggtaaagc |
218 |
Q |
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| T |
457881 |
taaatgatgtttatgattcatgtgtttttagcttaataggcgcaattggagtgatcattggcttgtatactgtgctttggggtaaagc |
457968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 468982 - 469082
Alignment:
| Q |
118 |
attattaatctaattaactgatgcttatgcttcatgtgagttagcatgataggcgcaattggagtgatcattggcttgtatgtcgtgctttggggtaaag |
217 |
Q |
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||||||||||||| ||| |||| ||| | ||||||||| |||||| ||||||| |||||||||||||||||||| |||||| | || ||||||||||||| |
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| T |
468982 |
attattaatctaactaaatgattcttctacttcatgtgtgttagcttgataggtgcaattggagtgatcattggtttgtatattgtactttggggtaaag |
469081 |
T |
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| Q |
218 |
c |
218 |
Q |
| |
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| T |
469082 |
c |
469082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 480885 - 480939
Alignment:
| Q |
13 |
ttgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggta |
67 |
Q |
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| T |
480885 |
ttgtgactgtatttgctatcttgttgcttcatgaggaaatatacattggaaggta |
480939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 449620 - 449672
Alignment:
| Q |
166 |
ataggcgcaattggagtgatcattggcttgtatgtcgtgctttggggtaaagc |
218 |
Q |
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||||||||||||||||||||||||||||||||| | || |||||||||||||| |
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|
| T |
449620 |
ataggcgcaattggagtgatcattggcttgtatattgtactttggggtaaagc |
449672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 449466 - 449553
Alignment:
| Q |
13 |
ttgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaatatttatgttctaaaaataaagattaatt |
100 |
Q |
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|||||||| |||||||| |||||| ||||||||||| ||||||| |||||||| ||||||||| ||||||| ||| | |||||||| |
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| T |
449466 |
ttgtgactgtattggcttccttgtttcttcatgaggagatatacaccggaaggtattaatatttaagttctaacaatgatgattaatt |
449553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 468877 - 468928
Alignment:
| Q |
22 |
tattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaata |
73 |
Q |
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| T |
468877 |
tattggctgccattttgcttcatgaggaaatatacattggaaggtagtaata |
468928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 27489411 - 27489311
Alignment:
| Q |
120 |
tattaatctaattaactgatgcttatgcttcatgtgagtta--gcatgataggcgcaattggagtgatcattggcttgtatgtcgtgctttggggtaaag |
217 |
Q |
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| T |
27489411 |
tattaatctaactaaatgattcttctgcttcatgtttgttatagcttgataggtgcaattggagtgatcattggcttgtatattgttctttggggaaaag |
27489312 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
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| |
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| T |
27489311 |
c |
27489311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 27489850 - 27489790
Alignment:
| Q |
13 |
ttgtgactatattggctgtcttgttgcttcatgaggaaatatacattggaaggtactaata |
73 |
Q |
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|||||||| |||| ||||| |||||||||||||||||| |||||||||||||||| ||||| |
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| T |
27489850 |
ttgtgactgtattagctgttttgttgcttcatgaggaagtatacattggaaggtagtaata |
27489790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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