View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4075_low_1 (Length: 569)
Name: NF4075_low_1
Description: NF4075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4075_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 220 - 553
Target Start/End: Complemental strand, 41238076 - 41237743
Alignment:
| Q |
220 |
gtccctgaattttttgatacagcacaatagtctttgacgttgatgacgtgcaaaattaaacaatggtgtgacagtccatgcgagtttcaaatcacttcca |
319 |
Q |
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| T |
41238076 |
gtccctgaattttttgatacagcacaatagtctttgacgttgatgacgtgcaaaattaaacaatggtgtgtcagtccatgcgagttttaaatcacttcca |
41237977 |
T |
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| Q |
320 |
ctttgaatctattgggaatgaattcaaaacgattgtactttgaacaactataaatgcaattatgttgtcaagggtttgaattgggaatttcctctgatcc |
419 |
Q |
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| T |
41237976 |
cattgaatctattgggaatgaattcaaaacgattgtactttgaacaactataaatgcaattatgttgtcaagggtttgaattgggaatttcctctgatcc |
41237877 |
T |
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| Q |
420 |
tagtttgataatgtttgttacccacttaaacatgatatattcgtcgtcccttccaccctccatttgtgtaattttttgttagtggatgaatatgataaaa |
519 |
Q |
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| T |
41237876 |
tagtttgataatgtttgttacccacttaaacatgatatattcgttgtcccttccaccctccatttgtgtaattttttgttagtggatgaatatgataaaa |
41237777 |
T |
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| Q |
520 |
gattaactgtaaactataaataaatggaactaat |
553 |
Q |
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| T |
41237776 |
gattaactgtaaactataaataaatggaactaat |
41237743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 41238315 - 41238094
Alignment:
| Q |
10 |
agtgagaagaattacgatcacctcataaagcttcttttgatcggagatagtggtaagttactcctttgcctcttctttcttgttttctcatagtgaggcc |
109 |
Q |
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| T |
41238315 |
agtgagaagaattacgatcacctcataaagcttcttttgatcggagatagtggtaagttactcctttgcctcttctttcttgttttctcatagtgaggcc |
41238216 |
T |
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| Q |
110 |
gatgtacttcagttttagaattcaatttttcaatcatgtactttgatcaattataaatgcaatattttgtcaagggttttgacttttgaatttgtacatt |
209 |
Q |
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| T |
41238215 |
gatgtactttagttttagaattcaatttttcaatcatgtactttgatcaattataaatgcaatattttgtcaagggttttgacttttgaatttgtacatt |
41238116 |
T |
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| Q |
210 |
gatcaatctagtccctgaattt |
231 |
Q |
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| T |
41238115 |
gatcaatctagtccctgaattt |
41238094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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