View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4075_low_3 (Length: 325)

Name: NF4075_low_3
Description: NF4075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4075_low_3
NF4075_low_3
[»] chr2 (12 HSPs)
chr2 (1-325)||(12018429-12018753)
chr2 (1-325)||(11987028-11987358)
chr2 (3-287)||(12012095-12012385)
chr2 (1-287)||(12005665-12005957)
chr2 (1-54)||(14550910-14550963)
chr2 (1-57)||(8579040-8579096)
chr2 (123-249)||(9364984-9365110)
chr2 (1-51)||(9365188-9365238)
chr2 (3-56)||(10336372-10336425)
chr2 (261-298)||(10353401-10353438)
chr2 (4-56)||(9275058-9275110)
chr2 (87-179)||(10336243-10336335)
[»] chr8 (1 HSPs)
chr8 (3-56)||(41966263-41966316)
[»] chr1 (5 HSPs)
chr1 (1-54)||(29467331-29467384)
chr1 (1-53)||(29452857-29452909)
chr1 (123-235)||(29452988-29453100)
chr1 (1-40)||(29442865-29442904)
chr1 (83-112)||(29423734-29423763)
[»] chr4 (1 HSPs)
chr4 (261-298)||(26575153-26575190)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 12018429 - 12018753
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctattcctcaatctgacagcaatgtgcaatttgccttttgcgtttacggctt 100  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12018429 ctttctggaacccttacatccgtaaacatcggattatccctcatctccctattcctcaatctgacagcaatttgcaatttgccttttgcgtttacggctt 12018528  T
Q  101 cggttttgatcctctctcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactctttacc 200  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12018529 cggttttgatcctttgtcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactctatacc 12018628  T
Q  201 tcgaagacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaattctaattctcttcatt 300  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018629 tcaaaaacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaattctaattctcttcatt 12018728  T
Q  301 ggataatgacaaggaaatttgataa 325  Q
    |||||||||||||||||||||||||    
T  12018729 ggataatgacaaggaaatttgataa 12018753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 11987028 - 11987358
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctat------tcctcaatctgacagcaatgtgcaatttgccttttgcgttta 94  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||      |||||||||||| | |||  | || || |||||   | || |    
T  11987028 ctttctggaaccctaacacccgtaaacatcggattatccctcatctccttatcccttttcctcaatctgatatcaacatccacttcgccttaaccattca 11987127  T
Q  95 cggcttcggttttgatcctctctcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactc 194  Q
    ||| ||||| ||||||||| | || || ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11987128 cggattcggctttgatcctttttcatccgattacaaactcatcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactc 11987227  T
Q  195 tttacctcgaagacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaattctaattctc 294  Q
    || |||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||  ||||| ||||||||||||||||||||||||| |||||    
T  11987228 ttcacctcgaagacgaactcgtggaaagtacttcctaatatagagtatgctctttgccatgtaaataccatgggagtttttgttgagaattctagttctc 11987327  T
Q  295 ttcattggataatgacaaggaaatttgataa 325  Q
    ||||||||| ||||||||||| || ||||||    
T  11987328 ttcattggaaaatgacaaggagatatgataa 11987358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 12012095 - 12012385
Alignment:
Q  3 ttctggaaccctaacatccgtagacatcggattatccctcatctccct------attcctcaatctgacagcaatgtgcaatttgccttttgcgtttacg 96  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||||      |||||||||||||| | |||  | || |  ||||||| |  |||||    
T  12012095 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgaaaccaaaatccactacgcctttttcacttacg 12012194  T
Q  97 gcttcggttttgatcctctctcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactctt 196  Q
    | || || ||||||||| | ||||| || || || ||| |||||||||||||||| |||||| |||| |||  |||||||||||||||||||||||||||    
T  12012195 gatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcatatgtcagactctt 12012294  T
Q  197 tacctcgaagacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaattct 287  Q
     |||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||     || ||||||||||||||||||||||||    
T  12012295 cacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggagtttttgttgagaattct 12012385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 12005665 - 12005957
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctc------cctattcctcaatctgacagcaatgtgcaatttgccttttgcgttta 94  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||      ||||||||||||||||| | ||| |  || |  ||||| | |  |||    
T  12005665 ctttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcctcaatctgagaccaaagcccactacgccttattcactta 12005764  T
Q  95 cggcttcggttttgatcctctctcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactc 194  Q
    ||| ||||| ||||||||| | ||||| || || || ||| ||||||||||||||||  | ||| ||   |||  |||||||||||||||||| || |||    
T  12005765 cggattcggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcatcgatttaacaaactttacttttgattcatatgtgagtctc 12005864  T
Q  195 tttacctcgaagacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaattct 287  Q
    || || ||||| || ||||| ||||||||||||||||| || || |||| | ||| |||||     || ||||| ||||||||||||||||||    
T  12005865 ttcacttcgaaaacaaactcatggaaagtacttcctagcattgagtatgttatttgctatgctctaaccatgggggtttttgttgagaattct 12005957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14550963 - 14550910
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctattc 54  Q
    |||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  14550963 ctttatggaaccctaacatccgtaaacatcgcattatccctgatctccctattc 14550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8579040 - 8579096
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctattcctc 57  Q
    |||||||||||||||||||||||| ||||||  |||||||| ||||||| |||||||    
T  8579040 ctttctggaaccctaacatccgtaaacatcgagttatcccttatctccccattcctc 8579096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 9365110 - 9364984
Alignment:
Q  123 gattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactctttacctcgaagacgaactcgtggaaag 222  Q
    |||||||||||||| ||||||||||  ||||||||| |||| |||||||  ||||||||  | || ||| | |||| || ||||| ||| || |||||||    
T  9365110 gattataaacttgttagaatctcttattttgttgatttacagaaccgtagctttgattcgcaggttagagtttttagcttgaagatgaattcatggaaag 9365011  T
Q  223 tacttcctagtatagactatgctcttt 249  Q
      |||||||||||  | ||||||||||    
T  9365010 agcttcctagtatgaattatgctcttt 9364984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9365238 - 9365188
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctcccta 51  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| ||||    
T  9365238 ctttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 10336425 - 10336372
Alignment:
Q  3 ttctggaaccctaacatccgtagacatcggattatccctcatctccctattcct 56  Q
    ||||| || |||| |||||||| |||||||||||||||| |||||||| |||||    
T  10336425 ttctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcct 10336372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 10353438 - 10353401
Alignment:
Q  261 acaatgggagtttttgttgagaattctaattctcttca 298  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  10353438 acaatgggggtttttgttgagaattctagttctcttca 10353401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 9275110 - 9275058
Alignment:
Q  4 tctggaaccctaacatccgtagacatcggattatccctcatctccctattcct 56  Q
    ||||||||||||||| | ||| ||||||||||||||||  ||||||| |||||    
T  9275110 tctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcct 9275058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 10336335 - 10336243
Alignment:
Q  87 tgcgtttacggcttcggttttgatcctctctcctctgattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgat 179  Q
    |||||| |||| |||||||||||| |  | ||| | ||||| |||||  |||||||||||||||| || ||||||||  ||| ||||||||||    
T  10336335 tgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgat 10336243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 41966263 - 41966316
Alignment:
Q  3 ttctggaaccctaacatccgtagacatcggattatccctcatctccctattcct 56  Q
    |||||||||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  41966263 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcct 41966316  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29467331 - 29467384
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctattc 54  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||    
T  29467331 ctttctggaatcctaacatccgtaaacatcggattattcctaatctccctattc 29467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29452857 - 29452909
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccctcatctccctatt 53  Q
    |||||||||||||||||||||||| ||||| || ||| ||| |||||||||||    
T  29452857 ctttctggaaccctaacatccgtaaacatcagaatattcctaatctccctatt 29452909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 29452988 - 29453100
Alignment:
Q  123 gattataaacttgtcagaatctcttggtttgttgatctacacaaccgtacttttgattcatatgtcagactctttacctcgaagacgaactcgtggaaag 222  Q
    ||||| |||||  |||||||||||||  | ||||||| |||  ||  ||||| ||||||| |||| |||||||| | |||||| | ||||||||||||||    
T  29452988 gattacaaactcctcagaatctcttgtatcgttgatccacaatactctacttctgattcacatgtgagactcttcagctcgaaaatgaactcgtggaaag 29453087  T
Q  223 tacttcctagtat 235  Q
      |||||||||||    
T  29453088 accttcctagtat 29453100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29442865 - 29442904
Alignment:
Q  1 ctttctggaaccctaacatccgtagacatcggattatccc 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29442865 ctttctggaaccctaacatccgtaaacaccggattatccc 29442904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 29423763 - 29423734
Alignment:
Q  83 cttttgcgtttacggcttcggttttgatcc 112  Q
    ||||||||||||||||||||||||||||||    
T  29423763 cttttgcgtttacggcttcggttttgatcc 29423734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 26575190 - 26575153
Alignment:
Q  261 acaatgggagtttttgttgagaattctaattctcttca 298  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  26575190 acaatgggtgtttttgttgagaattctagttctcttca 26575153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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