View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4076_high_5 (Length: 327)

Name: NF4076_high_5
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4076_high_5
NF4076_high_5
[»] chr2 (20 HSPs)
chr2 (5-327)||(23862916-23863238)
chr2 (137-191)||(36837780-36837834)
chr2 (136-191)||(1777471-1777526)
chr2 (136-191)||(2412430-2412485)
chr2 (136-191)||(23861754-23861809)
chr2 (136-191)||(25977872-25977927)
chr2 (136-191)||(25979253-25979308)
chr2 (237-327)||(11087154-11087244)
chr2 (135-191)||(8810705-8810761)
chr2 (136-191)||(19604921-19604976)
chr2 (137-180)||(24754171-24754214)
chr2 (136-191)||(25283274-25283329)
chr2 (136-191)||(8809598-8809654)
chr2 (136-184)||(25282409-25282457)
chr2 (134-189)||(1137981-1138036)
chr2 (136-191)||(1778792-1778847)
chr2 (136-191)||(30843646-30843701)
chr2 (127-189)||(146319-146381)
chr2 (136-189)||(18113091-18113144)
chr2 (134-191)||(21573936-21573993)
[»] chr3 (42 HSPs)
chr3 (136-191)||(52401019-52401074)
chr3 (136-191)||(20489360-20489415)
chr3 (136-191)||(52403126-52403181)
chr3 (237-319)||(42447661-42447743)
chr3 (134-191)||(20488366-20488423)
chr3 (136-191)||(39820606-39820661)
chr3 (136-191)||(53121304-53121359)
chr3 (136-185)||(42446528-42446577)
chr3 (131-191)||(4705678-4705738)
chr3 (136-188)||(46026078-46026130)
chr3 (136-191)||(45267307-45267362)
chr3 (124-191)||(47433811-47433878)
chr3 (136-191)||(48033060-48033115)
chr3 (136-191)||(48035734-48035789)
chr3 (136-191)||(52708619-52708674)
chr3 (136-189)||(20585648-20585701)
chr3 (136-185)||(40476223-40476272)
chr3 (139-191)||(977848-977900)
chr3 (136-188)||(40477379-40477431)
chr3 (136-188)||(54437472-54437524)
chr3 (136-187)||(38505585-38505636)
chr3 (137-180)||(42444040-42444083)
chr3 (136-191)||(45268572-45268627)
chr3 (137-189)||(52707539-52707591)
chr3 (237-312)||(3416594-3416669)
chr3 (136-191)||(32635596-32635651)
chr3 (136-191)||(32637190-32637245)
chr3 (137-184)||(37845408-37845455)
chr3 (136-191)||(39819314-39819369)
chr3 (136-191)||(43641145-43641200)
chr3 (136-191)||(46027419-46027474)
chr3 (136-187)||(51004144-51004195)
chr3 (237-287)||(22508836-22508886)
chr3 (251-293)||(45267422-45267464)
chr3 (137-191)||(50563813-50563867)
chr3 (237-294)||(20489258-20489315)
chr3 (136-189)||(45002330-45002383)
chr3 (124-189)||(50196289-50196354)
chr3 (237-294)||(52403022-52403079)
chr3 (136-172)||(3417813-3417849)
chr3 (136-188)||(9855180-9855232)
chr3 (134-166)||(35533279-35533311)
[»] chr1 (41 HSPs)
chr1 (136-188)||(24609921-24609973)
chr1 (136-191)||(9774890-9774945)
chr1 (136-191)||(27262910-27262965)
chr1 (136-191)||(27264218-27264273)
chr1 (136-191)||(39163026-39163081)
chr1 (136-191)||(46075052-46075107)
chr1 (237-327)||(30722219-30722309)
chr1 (131-189)||(51240116-51240174)
chr1 (136-189)||(48588965-48589018)
chr1 (136-189)||(48594052-48594105)
chr1 (136-189)||(48598663-48598716)
chr1 (136-191)||(23469971-23470026)
chr1 (136-191)||(24611119-24611174)
chr1 (136-191)||(35721103-35721158)
chr1 (136-191)||(37395635-37395690)
chr1 (136-191)||(47038868-47038923)
chr1 (136-191)||(50164405-50164460)
chr1 (137-191)||(9774040-9774094)
chr1 (237-310)||(24422618-24422691)
chr1 (127-191)||(20722465-20722529)
chr1 (136-191)||(11711256-11711310)
chr1 (136-191)||(13074576-13074631)
chr1 (136-191)||(20723690-20723745)
chr1 (136-191)||(24427371-24427426)
chr1 (136-191)||(26863862-26863917)
chr1 (136-191)||(26865186-26865241)
chr1 (136-182)||(2604138-2604184)
chr1 (139-191)||(17976766-17976818)
chr1 (139-191)||(17977561-17977613)
chr1 (139-191)||(27816722-27816774)
chr1 (136-191)||(11710555-11710610)
chr1 (136-191)||(34934749-34934804)
chr1 (136-191)||(35722287-35722342)
chr1 (136-183)||(45979506-45979553)
chr1 (236-306)||(24611004-24611074)
chr1 (136-189)||(10631473-10631526)
chr1 (237-286)||(13074483-13074532)
chr1 (124-189)||(35056520-35056585)
chr1 (139-191)||(27815446-27815498)
chr1 (129-189)||(31060782-31060842)
chr1 (136-191)||(39162825-39162881)
[»] chr7 (36 HSPs)
chr7 (136-191)||(35212070-35212125)
chr7 (136-191)||(24195609-24195664)
chr7 (136-191)||(41693647-41693702)
chr7 (135-191)||(28462630-28462686)
chr7 (136-191)||(13418952-13419007)
chr7 (136-191)||(31848146-31848201)
chr7 (136-191)||(42254960-42255015)
chr7 (137-191)||(12385709-12385763)
chr7 (136-186)||(31489942-31489992)
chr7 (237-327)||(37784083-37784173)
chr7 (137-187)||(38742184-38742234)
chr7 (237-302)||(36748300-36748365)
chr7 (136-188)||(5611512-5611564)
chr7 (136-188)||(31853550-31853602)
chr7 (131-187)||(36748195-36748250)
chr7 (136-188)||(36749252-36749304)
chr7 (139-191)||(39618661-39618712)
chr7 (136-184)||(39619800-39619848)
chr7 (136-191)||(17066427-17066482)
chr7 (136-191)||(32197911-32197966)
chr7 (136-191)||(41694957-41695012)
chr7 (137-191)||(11217073-11217127)
chr7 (237-319)||(32544648-32544730)
chr7 (137-191)||(32544776-32544830)
chr7 (136-189)||(32196686-32196739)
chr7 (237-293)||(42255061-42255117)
chr7 (136-187)||(554247-554298)
chr7 (136-191)||(12933421-12933476)
chr7 (136-191)||(25046242-25046297)
chr7 (251-310)||(31489819-31489878)
chr7 (136-191)||(40576768-40576823)
chr7 (148-191)||(42255904-42255947)
chr7 (140-191)||(43869914-43869965)
chr7 (139-191)||(25037755-25037807)
chr7 (237-293)||(36749147-36749203)
chr7 (237-293)||(39618758-39618814)
[»] chr6 (25 HSPs)
chr6 (134-189)||(17516162-17516217)
chr6 (136-191)||(17517311-17517366)
chr6 (136-189)||(29291361-29291414)
chr6 (136-191)||(18810534-18810589)
chr6 (136-191)||(21165248-21165303)
chr6 (136-191)||(34998143-34998198)
chr6 (127-191)||(20897499-20897563)
chr6 (136-191)||(16995453-16995508)
chr6 (136-191)||(21953208-21953263)
chr6 (136-191)||(26421845-26421900)
chr6 (241-319)||(26421717-26421795)
chr6 (134-191)||(25440675-25440732)
chr6 (137-189)||(1171655-1171707)
chr6 (131-191)||(1972397-1972457)
chr6 (136-188)||(3276369-3276421)
chr6 (134-189)||(13617529-13617584)
chr6 (130-189)||(17000281-17000340)
chr6 (137-188)||(20391217-20391268)
chr6 (134-181)||(20895958-20896005)
chr6 (134-185)||(30253547-30253598)
chr6 (137-191)||(3279501-3279555)
chr6 (132-182)||(25439646-25439696)
chr6 (136-189)||(1974156-1974209)
chr6 (237-294)||(17516265-17516322)
chr6 (136-189)||(31198617-31198670)
[»] chr5 (20 HSPs)
chr5 (136-191)||(3936580-3936635)
chr5 (134-188)||(15604063-15604116)
chr5 (136-191)||(4565395-4565450)
chr5 (136-191)||(6894012-6894067)
chr5 (136-191)||(27571131-27571186)
chr5 (134-191)||(3205104-3205161)
chr5 (136-191)||(3954054-3954109)
chr5 (136-187)||(15599767-15599818)
chr5 (136-191)||(31540498-31540553)
chr5 (237-310)||(4777743-4777816)
chr5 (136-191)||(3938062-3938117)
chr5 (131-174)||(25252638-25252681)
chr5 (131-174)||(25316423-25316466)
chr5 (136-187)||(27570058-27570109)
chr5 (136-182)||(35604421-35604467)
chr5 (237-294)||(3205003-3205060)
chr5 (136-223)||(14809165-14809252)
chr5 (136-189)||(37271361-37271414)
chr5 (135-191)||(25254133-25254189)
chr5 (135-191)||(25317923-25317979)
[»] scaffold0516 (1 HSPs)
scaffold0516 (136-223)||(1105-1192)
[»] chr8 (34 HSPs)
chr8 (131-188)||(28997998-28998055)
chr8 (136-188)||(14197827-14197879)
chr8 (134-189)||(3483633-3483688)
chr8 (136-191)||(10717123-10717178)
chr8 (136-191)||(10718450-10718505)
chr8 (136-191)||(22534724-22534779)
chr8 (136-191)||(28996836-28996891)
chr8 (136-191)||(36588224-36588279)
chr8 (136-191)||(45517962-45518017)
chr8 (136-189)||(1420446-1420499)
chr8 (237-294)||(38658583-38658640)
chr8 (136-189)||(39440426-39440479)
chr8 (136-191)||(4182624-4182679)
chr8 (252-327)||(18326629-18326704)
chr8 (136-191)||(22272272-22272327)
chr8 (136-191)||(22533319-22533374)
chr8 (129-188)||(38455442-38455501)
chr8 (136-191)||(39439926-39439981)
chr8 (130-191)||(4183981-4184042)
chr8 (253-310)||(14711651-14711708)
chr8 (136-189)||(41847184-41847237)
chr8 (136-191)||(3031545-3031600)
chr8 (136-191)||(30124225-30124280)
chr8 (136-191)||(38456732-38456787)
chr8 (136-191)||(38658483-38658538)
chr8 (137-184)||(41357375-41357422)
chr8 (136-186)||(6783580-6783630)
chr8 (131-189)||(10873225-10873283)
chr8 (237-291)||(30124123-30124177)
chr8 (136-189)||(20984148-20984201)
chr8 (134-191)||(45516397-45516454)
chr8 (139-191)||(1376940-1376992)
chr8 (139-191)||(1385557-1385609)
chr8 (129-189)||(34963609-34963669)
[»] chr4 (34 HSPs)
chr4 (130-191)||(22204051-22204112)
chr4 (131-191)||(42359348-42359408)
chr4 (136-186)||(41933820-41933870)
chr4 (136-223)||(33137198-33137285)
chr4 (136-188)||(3880501-3880553)
chr4 (136-188)||(32699319-32699371)
chr4 (136-294)||(16573380-16573537)
chr4 (237-312)||(29415654-29415729)
chr4 (136-191)||(45618287-45618342)
chr4 (136-191)||(54121702-54121757)
chr4 (136-189)||(34659708-34659761)
chr4 (137-185)||(41935078-41935126)
chr4 (136-184)||(44705301-44705349)
chr4 (136-191)||(3879088-3879143)
chr4 (136-191)||(19674416-19674471)
chr4 (136-191)||(45619733-45619788)
chr4 (136-173)||(5259171-5259208)
chr4 (136-189)||(19675624-19675677)
chr4 (124-189)||(26412529-26412594)
chr4 (136-188)||(33134893-33134945)
chr4 (139-191)||(54120759-54120811)
chr4 (134-185)||(16916067-16916118)
chr4 (156-191)||(40198596-40198631)
chr4 (136-191)||(42358034-42358089)
chr4 (136-190)||(4211563-4211617)
chr4 (137-191)||(17371847-17371901)
chr4 (136-189)||(12152438-12152491)
chr4 (136-189)||(14487804-14487857)
chr4 (136-189)||(46292394-46292447)
chr4 (137-189)||(5797484-5797536)
chr4 (248-312)||(29060762-29060826)
chr4 (137-185)||(35054665-35054713)
chr4 (136-184)||(38166497-38166545)
chr4 (147-191)||(44706366-44706410)
[»] scaffold0002 (4 HSPs)
scaffold0002 (139-191)||(344942-344994)
scaffold0002 (136-188)||(345902-345954)
scaffold0002 (136-188)||(374337-374389)
scaffold0002 (136-181)||(376381-376426)
[»] scaffold0517 (1 HSPs)
scaffold0517 (136-191)||(11524-11579)
[»] scaffold0230 (1 HSPs)
scaffold0230 (136-191)||(433-488)
[»] scaffold0106 (2 HSPs)
scaffold0106 (136-191)||(30909-30964)
scaffold0106 (136-191)||(29731-29786)
[»] scaffold0001 (2 HSPs)
scaffold0001 (136-191)||(120987-121042)
scaffold0001 (136-191)||(119595-119650)
[»] scaffold0095 (1 HSPs)
scaffold0095 (136-189)||(42759-42812)
[»] scaffold0562 (1 HSPs)
scaffold0562 (136-191)||(9924-9979)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 23863238 - 23862916
Alignment:
Q  5 gagtgagatgaagtggtatcttttgaagatgtaaagcgtgcttgattagtatctgtctccttaagggtttacgtttaccgtaattcaaagttgcttaaca 104  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23863238 gagtgaaaagaagtagtatcttttgaagatgtaaagcgtgcttgattagtatctgtctccttaagggtttacgtttaccgtaattcaaagttgcttaaca 23863139  T
Q  105 acctgatcgaatagtggtgatatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggtnnnnnnnnnnttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||           ||    
T  23863138 acctgatcgaatagtggtgatatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgatccctagtaaaaaaaaaaatt 23863039  T
Q  205 gaaatccatccttgcaaaannnnnnnnnnnncaaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactg 304  Q
    |||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23863038 gaaatccatccttgcaaaattttttgtttttcaaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgctgactg 23862939  T
Q  305 tgcaaagtcagccacgtgtcatc 327  Q
    |||||||||||||||||||||||    
T  23862938 tgcaaagtcagccacgtgtcatc 23862916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 36837834 - 36837780
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  36837834 taaaatatatttttggtctctgcaaatatagcgagtttgggttttggtccctggt 36837780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 1777471 - 1777526
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  1777471 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggt 1777526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 2412485 - 2412430
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  2412485 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggt 2412430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 23861754 - 23861809
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  23861754 ctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggt 23861809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 25977872 - 25977927
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  25977872 ctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggt 25977927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 25979308 - 25979253
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  25979308 ctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggt 25979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 11087154 - 11087244
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccacgtgtcatc 327  Q
    |||||||||| | |||||||||| |||||||||||||  |||| |||||  |||||| ||| |||||||| |||||  |||||||||||||    
T  11087154 aaaatagtctcttgacccactttcttgctgatttgtctcatttttgcctgcgtggcaaatgctgactgtgtaaagttggccacgtgtcatc 11087244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 8810761 - 8810705
Alignment:
Q  135 actaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||||||||||||||| |||| ||||| ||||  ||||||||    
T  8810761 actaaaatatgtttttggtctctgcaaatatagcgaatttggattttaatccctggt 8810705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 19604976 - 19604921
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||| |||||||||   ||||||||||||||||||||    
T  19604976 ctaaaatatgtttttggtccctgtaaatatggctcatttgggttttggtccctggt 19604921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 24754214 - 24754171
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttt 180  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  24754214 taaaatatgtttttggtccctgcaaatatggcgaatttgggttt 24754171  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 25283329 - 25283274
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||| |||| |||||| ||||||||    
T  25283329 ctaaaatatgtttttggtcactgcaaatatagcgaatttgagttttgatccctggt 25283274  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 8809598 - 8809654
Alignment:
Q  136 ctaaaatatgtttttggtctct-gcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| || ||||||||  ||| ||||||||||||||||||||    
T  8809598 ctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctggt 8809654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 25282409 - 25282457
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    ||||||||||||||||||| ||| ||||||| |||||||| ||||||||    
T  25282409 ctaaaatatgtttttggtccctgtaaatatgtcgagtttgagttttggt 25282457  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 1137981 - 1138036
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||||| |||||||| ||||||||||| |  |||| ||||||||||||||    
T  1137981 gactaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccctg 1138036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 1778847 - 1778792
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||  |||||||||| |||| ||||||||||||||| ||||    
T  1778847 ctaaaatatgcttttggttcctgcaaatatagcgactttgggttttggtccttggt 1778792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 30843646 - 30843701
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||  || ||||||||||  ||||||||||||||||||||||||    
T  30843646 ctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggt 30843701  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 146319 - 146381
Alignment:
Q  127 tatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||| |||||||||||| |||||||| ||||||||||| |  |||| |||||| |||||||    
T  146319 tatattagactaaaatatggttttggtccctgcaaatatgcctcgttttggttttagtccctg 146381  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 18113091 - 18113144
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||| | ||||| |||||| |||||||    
T  18113091 ctaaaatatggttttggtccctgcaaatatgcctagttttggttttagtccctg 18113144  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 21573936 - 21573993
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||| |||||||| ||||||||||| | ||||||  ||||||||| ||||    
T  21573936 gactaaaatatgcttttggtccctgcaaatatgacaagtttgatttttggtccttggt 21573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 52401019 - 52401074
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52401019 ctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggt 52401074  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 20489415 - 20489360
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  20489415 ctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggt 20489360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 52403181 - 52403126
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  52403181 ctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtccctggt 52403126  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 42447743 - 42447661
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccac 319  Q
    ||||||||| ||||||||||||| |||||||||||||| |||| |||||||||| || ||| |||||||| ||||| ||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtgacagatgctgactgtgtaaagttagccac 42447661  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 20488366 - 20488423
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  20488366 gactaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggt 20488423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 39820661 - 39820606
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  39820661 ctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggt 39820606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 53121304 - 53121359
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  53121304 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggt 53121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 42446528 - 42446577
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  42446528 ctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtc 42446577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 4705678 - 4705738
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| |||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||    
T  4705678 tttggctaaaatatgcttttgatccctgcaaatatggcgagtttaggttttggtccctggt 4705738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 46026078 - 46026130
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  46026078 ctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccct 46026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 45267307 - 45267362
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||| || |||||||||| ||||||||| |||||||||||||||    
T  45267307 ctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggt 45267362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 47433878 - 47433811
Alignment:
Q  124 atatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| | |||||||||| |||||||| |||||||||| |||| |||| |||||||||||||||    
T  47433878 atatatattaggctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggt 47433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 48033060 - 48033115
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||||||  ||||||||||| |||||||| ||||||||||||||    
T  48033060 ctaaaatatgtttttggtccttgcaaatatggtgagtttggattttggtccctggt 48033115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 48035789 - 48035734
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||    
T  48035789 ctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctggt 48035734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 52708674 - 52708619
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||    
T  52708674 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggt 52708619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 20585701 - 20585648
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||||||||| || |||||||||| |||||||||| ||||||||||||    
T  20585701 ctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtccctg 20585648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 40476223 - 40476272
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  40476223 ctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtc 40476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 977900 - 977848
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||    
T  977900 aaatatgcttttggtccctgcaaatatgacgagtttgggttttggtccttggt 977848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 40477431 - 40477379
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||| |||||||| ||||||||||  |||||||||||||||||||||    
T  40477431 ctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtccct 40477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 54437524 - 54437472
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||| |||| |||| ||||||||||||    
T  54437524 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtccct 54437472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 38505636 - 38505585
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||||||||| ||||| || |||||||||||||||||||| |||||||||||    
T  38505636 ctaaaatatgcttttgctccctgcaaatatggcgagtttgagttttggtccc 38505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 42444040 - 42444083
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttt 180  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  42444040 taaaatatgtttttggtccctgcaaatatggcaagtttgggttt 42444083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 45268627 - 45268572
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||  || |||||||||| || ||||||||||||||||||||||    
T  45268627 ctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggt 45268572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 52707539 - 52707591
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||  ||||||||| |||| |||| |||||||||||||    
T  52707539 taaaatatgtttttggtccttgcaaatatagcgaatttgagttttggtccctg 52707591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 3416594 - 3416669
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagt 312  Q
    |||||| || |||| |||||||| ||||| || ||||  |||||||| ||||||||| |||||||||||| |||||    
T  3416594 aaaataatcattgggcccacttttttgctcatgtgtctcatttatgcatatgtggcagatgttgactgtgtaaagt 3416669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 32635596 - 32635651
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| ||||| |||  || |||||| |||||||||||||||||||||||||    
T  32635596 ctaaaatatattttttgtccttgtaaatatagcgagtttgggttttggtccctggt 32635651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 32637245 - 32637190
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||| |||| | |||||||||||||||||| ||||||    
T  32637245 ctaaaatatgcttttggtccctgtaaatgtagcgagtttgggttttggttcctggt 32637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 37845408 - 37845455
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    ||||||||||||||||||||||||||||| | |||||||  |||||||    
T  37845408 taaaatatgtttttggtctctgcaaatatagtgagtttgtattttggt 37845455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 39819314 - 39819369
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||| ||| |||||||||| |||||||||  ||||||||||||||    
T  39819314 ctaaaatatggttttagtccctgcaaatatagcgagtttgaattttggtccctggt 39819369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 43641145 - 43641200
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||| ||| |||||||||| |||||||||| || |||||||||||    
T  43641145 ctaaaatatgcttttagtccctgcaaatatagcgagtttggattatggtccctggt 43641200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 46027474 - 46027419
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||  |||||||| |||||||||| |||||||||  ||||||||||||||    
T  46027474 ctaaaatatacttttggtccctgcaaatatagcgagtttgaattttggtccctggt 46027419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 51004144 - 51004195
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    ||||||||||||||| | | ||| ||||||||||| ||||||||||||||||    
T  51004144 ctaaaatatgtttttagaccctgtaaatatggcgaatttgggttttggtccc 51004195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 22508836 - 22508886
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctat 287  Q
    |||||||||| |||| ||||||| |||||||||||||  ||||||||||||    
T  22508836 aaaatagtctctggatccacttttttgctgatttgtcacatttatgcctat 22508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 45267422 - 45267464
Alignment:
Q  251 acccactttattgctgatttgtccaatttatgcctatgtggca 293  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||    
T  45267422 acccactttcttgatgatttgtccaatttttgcctatgtggca 45267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 50563867 - 50563813
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||| ||||||| ||||||  ||||||||| |||||||| |||||    
T  50563867 taaaatatgtttttagtctctgaaaatataacgagtttggattttggtcgctggt 50563813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 20489315 - 20489258
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
    ||||||||  |||| ||||||||| || ||||||| | ||||||||||||||||||||    
T  20489315 aaaatagttattggccccactttactgatgatttggcaaatttatgcctatgtggcat 20489258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 45002383 - 45002330
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||||||||||||||| |  |||| |||||| |||||||    
T  45002383 ctaaaatatggttttggtctctgcaaatatgcctcgttttggttttagtccctg 45002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 50196289 - 50196354
Alignment:
Q  124 atatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||| |  |||| |||||| |||||||    
T  50196289 atatttatttgactaaaatatggttttagtccctgcaaatatgcctcgttttggttttagtccctg 50196354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 52403079 - 52403022
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
    ||||||||| ||||||||||||| ||| |||||||||  |||| ||| ||||||||||    
T  52403079 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcat 52403022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 3417849 - 3417813
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagt 172  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  3417849 ctaaaatatgtttttggtccctgtaaatatggcgagt 3417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 9855180 - 9855232
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||| ||||| || ||| |||||| |||||||||| |||||||||||    
T  9855180 ctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtccct 9855232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 35533279 - 35533311
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatg 166  Q
    |||||||||||| ||||||||||||||||||||    
T  35533279 gactaaaatatggttttggtctctgcaaatatg 35533311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 24609921 - 24609973
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24609921 ctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccct 24609973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 9774945 - 9774890
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  9774945 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggt 9774890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 27262910 - 27262965
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  27262910 ctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggt 27262965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 27264273 - 27264218
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  27264273 ctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggt 27264218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 39163081 - 39163026
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  39163081 ctaaaatatgcttttggtccctgcaaatatggcgaggttgggttttggtccctggt 39163026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 46075107 - 46075052
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  46075107 ctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggt 46075052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 30722219 - 30722309
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccacgtgtcatc 327  Q
    |||||||||  |||||||||||| |||||||||||||  |||| |||||| |||||| ||| |||||||| |||||  |||||||||||||    
T  30722219 aaaatagtccctggacccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgactgtgtaaagttggccacgtgtcatc 30722309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 51240116 - 51240174
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||    
T  51240116 tttgactaaaatatgtttttggtctctgcaaatatagcgaatttggattttgatccctg 51240174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 48589018 - 48588965
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  48589018 ctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtccctg 48588965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 48594105 - 48594052
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  48594105 ctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctg 48594052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 48598716 - 48598663
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  48598716 ctaaaatatgtttttggtccctgtaaatatggcgagtttgggttttgatccctg 48598663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 23470026 - 23469971
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||    
T  23470026 ctaaaatatgtttttggtccctgcaaatatagcgagtttcggttttgatccctggt 23469971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 24611174 - 24611119
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||    
T  24611174 ctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggt 24611119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 35721103 - 35721158
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||    
T  35721103 ctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggt 35721158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 37395635 - 37395690
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  37395635 ctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggt 37395690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 47038868 - 47038923
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||    
T  47038868 ctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggt 47038923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 50164405 - 50164460
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||    
T  50164405 ctaaaatatgcttttggtccctgcaaatatggcgagtttgagttttggtccttggt 50164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 9774040 - 9774094
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||||| ||||||||||  |||||||| |||||||||||||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggt 9774094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 24422618 - 24422691
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaa 310  Q
    ||||||||| || |||||||||| ||||| |||||||  |||| ||||||||||||||||| ||||| ||||||    
T  24422618 aaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaa 24422691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 20722465 - 20722529
Alignment:
Q  127 tatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| ||| ||||||| || |||||||| |||||||||| |||| ||||||||||||||||||||    
T  20722465 tataattggctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggt 20722529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 11711310 - 11711256
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||    
T  11711310 ctaaaatatgtttttggtccctgcaaatatagcgaatttggg-tttggtccctggt 11711256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 13074631 - 13074576
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| ||||||||  ||||||||||| |||||||| |||||||||||||||    
T  13074631 ctaaaatatatttttggttcctgcaaatatgacgagtttgagttttggtccctggt 13074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 20723745 - 20723690
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||| |||| ||||| |||||||||    
T  20723745 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggt 20723690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 24427426 - 24427371
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| || ||||||| ||||||||| ||||| |||||||||    
T  24427426 ctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggt 24427371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 26863862 - 26863917
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| ||||||||||| |||||||||| |||| |||| |||||||||||||||    
T  26863862 ctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggt 26863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 26865241 - 26865186
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| |||||||||||||||||||| |||| ||||| |||| |||||||||    
T  26865241 ctaaaatatatttttggtctctgcaaatatagcgaatttggattttagtccctggt 26865186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 2604184 - 2604138
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttg 182  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  2604184 ctaaaatatgtttttagtccctgcaaatatggggagtttgggttttg 2604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 17976766 - 17976818
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||  |||||||||| |||| ||||||||||||||||||||    
T  17976766 aaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggt 17976818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 17977613 - 17977561
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  17977613 aaatatggttttggtccctgcaaatatagcgaatttgggttttggtccttggt 17977561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 27816774 - 27816722
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| |||||||||| || | ||||||||||||||||||||    
T  27816774 aaatatggttttggtccctgcaaatatagccaatttgggttttggtccctggt 27816722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 11710555 - 11710610
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||| || ||| ||||||  |||| |||||||||||||||||||    
T  11710555 ctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggt 11710610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 34934804 - 34934749
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||| ||| |||||||||| |||| ||||||||||||||| ||||    
T  34934804 ctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggt 34934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 35722342 - 35722287
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||| |||||| |||| ||||| |||||||| |||||    
T  35722342 ctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggtctctggt 35722287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 45979553 - 45979506
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgg 183  Q
    ||||||||||||||||||| |||||||||| |||| |||| |||||||    
T  45979553 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttgg 45979506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 24611074 - 24611004
Alignment:
Q  236 caaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtg 306  Q
    |||||||||| ||||||||||||| ||| |||||||||  |||| || ||||||||||  || ||||||||    
T  24611074 caaaatagtccttggacccactttcttgatgatttgtctcatttttgtctatgtggcagctgctgactgtg 24611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 10631526 - 10631473
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| |||||||||||||  |||| |||||| |||||||    
T  10631526 ctaaaatatggttttggtccctgcaaatatggctcgttttggttttagtccctg 10631473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 13074532 - 13074483
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgccta 286  Q
    |||||||||||||| |||||||||||| ||||||| |  |||||||||||    
T  13074532 aaaatagtctttggccccactttattgatgatttggcacatttatgccta 13074483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 35056520 - 35056585
Alignment:
Q  124 atatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||| || |||||||||| |||||||| ||||||||||| |  |||| |||||| |||||||    
T  35056520 atatatatatggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccctg 35056585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 27815446 - 27815498
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| || ||||| |||||||||| || | ||||||||||||||||||||    
T  27815446 aaatatggttctggtccctgcaaatatagccaatttgggttttggtccctggt 27815498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 31060782 - 31060842
Alignment:
Q  129 tatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||| |||||||||| |||||||| ||||||||||| |  |||| |||||| |||||||    
T  31060782 tatttggctaaaatatggttttggtccctgcaaatatgtcttgttttggttttagtccctg 31060842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 39162825 - 39162881
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaata-tggcgagtttgggttttggtccctggt 191  Q
    ||||| |||| |||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  39162825 ctaaattatgcttttggtccctgcaaataatggcgagtttggattttggtccttggt 39162881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 35212070 - 35212125
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  35212070 ctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggt 35212125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 24195609 - 24195664
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  24195609 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggt 24195664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 41693647 - 41693702
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  41693647 ctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggt 41693702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 28462686 - 28462630
Alignment:
Q  135 actaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||    
T  28462686 actaaaatatgcttttggtctctgcaaatatgacgaatttgggttttgatccctggt 28462630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 13418952 - 13419007
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||    
T  13418952 ctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggt 13419007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 31848201 - 31848146
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||    
T  31848201 ctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggt 31848146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 42254960 - 42255015
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||    
T  42254960 ctaaaatatgcttttggtccctgtaaatatggcgagtttgagttttggtccctggt 42255015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 12385763 - 12385709
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||    
T  12385763 taaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggt 12385709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 31489992 - 31489942
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtcc 186  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  31489992 ctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtcc 31489942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 37784083 - 37784173
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccacgtgtcatc 327  Q
    ||||||||| ||||||| ||||| |||||||||||||  |||  ||||||||||||| ||||||| |||| |||||  ||||| |||||||    
T  37784083 aaaatagtccttggaccaactttcttgctgatttgtctcattcctgcctatgtggcagatgttgattgtgtaaagttggccacatgtcatc 37784173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 38742184 - 38742234
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  38742184 taaaatatgtttttagtccctgcaaatatagcgagtttgggttttggtccc 38742234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 36748300 - 36748365
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgac 302  Q
    |||||||||| |||||||||||| |||||||||||||  |||| ||||||||||||| ||| ||||    
T  36748300 aaaatagtctctggacccacttttttgctgatttgtctcatttttgcctatgtggcagatgctgac 36748365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 5611564 - 5611512
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||| |||||||| |||||||||| ||||||||||||||| ||||||    
T  5611564 ctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtccct 5611512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 31853550 - 31853602
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||| | |||||||| |||||||||||    
T  31853550 ctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtccct 31853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 36748195 - 36748250
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  36748195 tttggctaaaatatgtttttggtccctgcaaatat-gagagtttgggttttggtccc 36748250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 36749304 - 36749252
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||||||||||||  |||||||||| |||||||| ||||||||||||    
T  36749304 ctaaaatatgtttttggtcattgcaaatatgacgagtttgagttttggtccct 36749252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 39618661 - 39618712
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  39618661 aaatatgtttttg-tctatgcaaaaatggcgagtttgggttttggtccctggt 39618712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 39619848 - 39619800
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  39619848 ctaaaatatgcttttggtccatgcaaatatggcgagtttgggttttggt 39619800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 17066427 - 17066482
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||  || |||||||||| |||||||||||||||||||||||||    
T  17066427 ctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggt 17066482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 32197966 - 32197911
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  32197966 ctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggt 32197911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 41695012 - 41694957
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||  || |||||||||| ||||||||| |||||||||||||||    
T  41695012 ctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggt 41694957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 11217127 - 11217073
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| |||||||| |||||||||| |||||||||  ||||||||||||||    
T  11217127 taaaatatgcttttggtccctgcaaatatagcgagtttgaattttggtccctggt 11217073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 32544730 - 32544648
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccac 319  Q
    ||||||||| ||||  | ||||| ||||||||||||  ||||| ||||||||||||| ||| ||||| |||||||||| ||||    
T  32544730 aaaatagtcattgggtctactttcttgctgatttgtttaatttttgcctatgtggcagatgatgactatgcaaagtcaaccac 32544648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 32544830 - 32544776
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtccttggt 32544776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 32196686 - 32196739
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||| |||||||||| |||  ||||| ||||||||||||    
T  32196686 ctaaaatatgtttttggtccctgcaaatatagcgtatttggattttggtccctg 32196739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 42255061 - 42255117
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggca 293  Q
    ||||||||| ||||| ||||||| |||||||||||||| |||| ||| |||||||||    
T  42255061 aaaatagtcattggatccactttcttgctgatttgtcccatttctgcatatgtggca 42255117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 554247 - 554298
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||||||||  | |||||| |||||||||| |||||||||||||||||||||    
T  554247 ctaaaatataatattggtccctgcaaatatagcgagtttgggttttggtccc 554298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 12933421 - 12933476
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| | |||||||  ||||||||||||||    
T  12933421 ctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggt 12933476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 25046297 - 25046242
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||||||  |||||||||||||||||| | ||||||||| ||||    
T  25046297 ctaaaatatgattttggtccttgcaaatatggcgagtttagattttggtccatggt 25046242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 31489878 - 31489819
Alignment:
Q  251 acccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaa 310  Q
    ||||||||| |||||||||||||  |||| ||||||||||||||||| | ||| ||||||    
T  31489878 acccactttcttgctgatttgtctcatttttgcctatgtggcatatgctaactctgcaaa 31489819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 40576768 - 40576823
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||||||||||| ||| ||||| |||||||| |||||    
T  40576768 ctaaaatatgcttttggtccctgcaaatatgacgaatttggattttggtctctggt 40576823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 42255947 - 42255904
Alignment:
Q  148 tttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| ||||||||||| |||||||| |||||||||||||||    
T  42255947 tttggtccctgcaaatatgacgagtttgagttttggtccctggt 42255904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 43869965 - 43869914
Alignment:
Q  140 aatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||| |||||||| |||||||||| || | ||||||||||||||||||||    
T  43869965 aatatggttttggtccctgcaaatatagccaatttgggttttggtccctggt 43869914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 25037755 - 25037807
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||| ||| ||||||||||| ||||||||  ||||||||||||||    
T  25037755 aaatatgattttagtccctgcaaatatgacgagtttgaattttggtccctggt 25037807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 36749203 - 36749147
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggca 293  Q
    ||||||||||||||| ||||||| | |||||||||||  |||| ||| |||||||||    
T  36749203 aaaatagtctttggatccactttctcgctgatttgtctcatttctgcatatgtggca 36749147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 39618758 - 39618814
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggca 293  Q
    ||||||||| ||||||||||||| ||| |||||||||  |||| || ||||||||||    
T  39618758 aaaatagtccttggacccactttcttgatgatttgtcttatttttgtctatgtggca 39618814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 17516162 - 17516217
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  17516162 gactaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccctg 17516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 17517366 - 17517311
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  17517366 ctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggt 17517311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 29291361 - 29291414
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  29291361 ctaaaatatgcttttggtccttgcaaatatggcgagtttgggttttggtccctg 29291414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 18810534 - 18810589
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||||||||||||    
T  18810534 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggt 18810589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 21165248 - 21165303
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||    
T  21165248 ctaaaatatgcttttggtccctgcaaatatagcgagtttgtgttttggtccctggt 21165303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 34998198 - 34998143
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||| || |||||||||| |||||||||||||||||||||||||    
T  34998198 ctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggt 34998143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 20897563 - 20897499
Alignment:
Q  127 tatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| ||| |||||||||| |||||||| |||||||||| | || ||||||||||||||||||||    
T  20897563 tataattggctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggt 20897499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 16995453 - 16995508
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||   || ||||||||||||||||||||    
T  16995453 ctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggt 16995508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 21953208 - 21953263
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||    
T  21953208 ctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggt 21953263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 26421900 - 26421845
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||| ||||||||||||||||||||||| |||| |||| ||||| |||||||||    
T  26421900 ctaaaacatgtttttggtctctgcaaatatagcgaatttgagttttagtccctggt 26421845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 26421795 - 26421717
Alignment:
Q  241 tagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccac 319  Q
    ||||| ||||| ||||||| |||||||||||||  |||| ||||||||| ||| ||| ||||| |||||||||| ||||    
T  26421795 tagtcattggatccactttcttgctgatttgtctcatttttgcctatgtagcagatgatgactatgcaaagtcaaccac 26421717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 25440732 - 25440675
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||| |||||||||  | |||||||||||||||||  ||||||||||||||    
T  25440732 gactaaaatatatttttggtccttacaaatatggcgagtttgaattttggtccctggt 25440675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 1171707 - 1171655
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||| || ||||||||||  ||||||||| ||||||||||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccctg 1171655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 1972397 - 1972457
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| ||||||||||||||||||| |||||||||  |||| |||||||||| ||| |||||    
T  1972397 tttggctaaaatatgtttttggtccctgcaaataaagcgaatttgggttttagtctctggt 1972457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 3276369 - 3276421
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||| |||| ||||| |||| ||||||    
T  3276369 ctaaaatatgtttttggtccctgcaaatatagcgaatttggattttagtccct 3276421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 13617529 - 13617584
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||||| |||||||| |||||||||||||  |||| |||||| |||||||    
T  13617529 gactaaaatatggttttggtccctgcaaatatggctcgttttggttttagtccctg 13617584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 17000340 - 17000281
Alignment:
Q  130 atttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||| |||||||||  |||||||| |||||||| | | |||||||||||||||||||||    
T  17000340 atttggctaaaatatacttttggtccctgcaaatgtagtgagtttgggttttggtccctg 17000281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 20391217 - 20391268
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||| |||||||| |||||||||| | || |||||||||||||||||    
T  20391217 taaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtccct 20391268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 20895958 - 20896005
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggtttt 181  Q
    ||||||||||||||||||||| |||||||||| |||| |||| |||||    
T  20895958 gactaaaatatgtttttggtccctgcaaatatagcgaatttgagtttt 20896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 30253598 - 30253547
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    ||||||||||||||||||||| |||||||||  |||||| || |||||||||    
T  30253598 gactaaaatatgtttttggtccctgcaaatacagcgagtatgagttttggtc 30253547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 3279555 - 3279501
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| || |||||||||| |||||||||  ||||||| ||||||    
T  3279555 taaaatatgtttttgatccctgcaaatatagcgagtttgaattttggttcctggt 3279501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 25439646 - 25439696
Alignment:
Q  132 ttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttg 182  Q
    ||||||||||||||||||| ||| ||||||||||  ||| |||||||||||    
T  25439646 ttgactaaaatatgtttttagtccctgcaaatataacgattttgggttttg 25439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 1974209 - 1974156
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||||||||| ||  ||||||||| |||| |||| |||||||||||||    
T  1974209 ctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtccctg 1974156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 17516265 - 17516322
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
    ||||||||| ||||||||||||| ||| |||||||||  |||| ||| ||||||||||    
T  17516265 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcat 17516322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 31198617 - 31198670
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| |||||||||||||  |||| |||||| |||||||    
T  31198617 ctaaaatatggttttggtccctgcaaatatggctcgttttggttttagtccctg 31198670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 3936580 - 3936635
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  3936580 ctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggt 3936635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 15604116 - 15604063
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  15604116 gactaaaatgtgtttttggtc-ctgcaaatatggcgagtttgggttttggtccct 15604063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 4565395 - 4565450
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  4565395 ctaaaatatgtttttagtccctacaaatatagcgagtttgggttttggtccctggt 4565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 6894067 - 6894012
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||    
T  6894067 ctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggt 6894012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 27571186 - 27571131
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||    
T  27571186 ctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggt 27571131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 3205161 - 3205104
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||| ||||| || |||||||||||  |||||||||||||||||||||||    
T  3205161 gactaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctggt 3205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 3954054 - 3954109
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||||||||||||  |||||||||  ||| ||||||||||||||||||||    
T  3954054 ctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggt 3954109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 15599767 - 15599818
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||||||||| |||||||| || |||||||||||| ||||||||||||||||    
T  15599767 ctaaaatatgcttttggtccctacaaatatggcgaatttgggttttggtccc 15599818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 31540498 - 31540553
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||||||||||  ||| ||||||||||||| ||||||    
T  31540498 ctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtacctggt 31540553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 4777743 - 4777816
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaa 310  Q
    ||||||||| || ||||||||||  |||| ||||||||||||| || |||| ||||| |||||||| |||||||    
T  4777743 aaaatagtccttagacccacttttgtgctaatttgtccaatttttgtctatatggcaaatgttgaccgtgcaaa 4777816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 3938117 - 3938062
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||| ||| |||||||||| || ||||| ||||||||||||||||    
T  3938117 ctaaaatatgcttttagtccctgcaaatatagcaagtttaggttttggtccctggt 3938062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 25252638 - 25252681
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagttt 174  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||    
T  25252638 tttggctaaaatatgtttttgatctctgcaaatatagcgagttt 25252681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 25316423 - 25316466
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagttt 174  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||    
T  25316423 tttggctaaaatatgtttttgatctctgcaaatatagcgagttt 25316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 27570058 - 27570109
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccc 187  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||||| ||||    
T  27570058 ctaaaatatgattttggtccttgcaaatatagcgagtttgggttttgttccc 27570109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 35604421 - 35604467
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttg 182  Q
    |||||||||||||||||| |||||||||||  |||||||| ||||||    
T  35604421 ctaaaatatgtttttggtttctgcaaatataacgagtttgagttttg 35604467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 3205060 - 3205003
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
    ||||||||| |||| |||||||||||| ||||||| |  ||||||||||| |||||||    
T  3205060 aaaatagtcattggccccactttattgttgatttggcacatttatgcctacgtggcat 3205003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 14809165 - 14809252
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggtnnnnnnnnnntttgaaatccatccttgcaaaa 223  Q
    |||||||||||||||| || || ||||||| |||| ||||| ||||||||||| ||          ||||||||||||||||||||||    
T  14809165 ctaaaatatgtttttgatccctacaaatatagcgaatttggattttggtccctagtagaaataaattttgaaatccatccttgcaaaa 14809252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 37271361 - 37271414
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||||||||||||||| |  |||| |||||| |||||||    
T  37271361 ctaaaatatggttttggtctctgcaaatatgcctcgttttggttttagtccctg 37271414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 25254189 - 25254133
Alignment:
Q  135 actaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||| |||||||| ||||||||||   ||||||| |||||| ||||||||    
T  25254189 actaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggt 25254133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 25317979 - 25317923
Alignment:
Q  135 actaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||| |||||||| ||||||||||   ||||||| |||||| ||||||||    
T  25317979 actaaaatatgcttttggtccctgcaaatatatagagtttgagttttgatccctggt 25317923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 1192 - 1105
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggtnnnnnnnnnntttgaaatccatccttgcaaaa 223  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||          ||||||||||||||||||||||    
T  1192 ctaaaatatatttttggtctctgcaaatatggcgagtttgagttttggtccctcgtaaattttttttttgaaatccatccttgcaaaa 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 28998055 - 28997998
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  28998055 tttggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccct 28997998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 14197827 - 14197879
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  14197827 ctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccct 14197879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 3483633 - 3483688
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  3483633 gactaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctg 3483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 10717123 - 10717178
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  10717123 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggt 10717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 10718505 - 10718450
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  10718505 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggt 10718450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 22534779 - 22534724
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||| || |||||||||| |||||||||||||||||||||||||    
T  22534779 ctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggt 22534724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 28996836 - 28996891
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||||||||||||    
T  28996836 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggt 28996891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 36588224 - 36588279
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||    
T  36588224 ctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggt 36588279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 45518017 - 45517962
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||| ||| |||||||||||||||||||||||||    
T  45518017 ctaaaatatgcttttggtccctgcaagtatagcgagtttgggttttggtccctggt 45517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 1420499 - 1420446
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||||||||||||| |||||||||| |||||||||| | ||||||||||    
T  1420499 ctaaaatatgtttttggtccctgcaaatatagcgagtttggatattggtccctg 1420446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 38658583 - 38658640
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
    |||||||||||||| |||||||||||| ||||||| |  |||||||||||||||||||    
T  38658583 aaaatagtctttggccccactttattgatgatttggcacatttatgcctatgtggcat 38658640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 39440479 - 39440426
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| ||||||||  ||||||||||||||||||| |||||||||||||    
T  39440479 ctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 39440426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 4182624 - 4182679
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||    
T  4182624 ctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggt 4182679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 18326629 - 18326704
Alignment:
Q  252 cccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagtcagccacgtgtcatc 327  Q
    |||||||| ||| |||||||||| |||| ||||||||||||| ||||||| |||| || ||  |||||||||||||    
T  18326629 cccactttcttgttgatttgtcccatttctgcctatgtggcagatgttgattgtgtaatgttggccacgtgtcatc 18326704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 22272327 - 22272272
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| | |||||||| |||| ||||||||||||||||||||    
T  22272327 ctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggt 22272272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 22533319 - 22533374
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||| | |||| |||||||||||||||||||||||||    
T  22533319 ctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggt 22533374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 38455442 - 38455501
Alignment:
Q  129 tatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||||||||||  ||||||||| | || |||| ||||||||||||    
T  38455442 tatttgactaaaatatgtttttggtccttgcaaatatagtgaatttgagttttggtccct 38455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 39439926 - 39439981
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||||| |||||||    
T  39439926 ctaaaatatgattttggtccctgcaaatatggctagtttgagttttggaccctggt 39439981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 4184042 - 4183981
Alignment:
Q  130 atttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||| |||||||||| |||| ||| |||||||||| | | |||||||||||||||||||||    
T  4184042 atttggctaaaatatgcttttagtccctgcaaatatagtgcgtttgggttttggtccctggt 4183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 14711651 - 14711708
Alignment:
Q  253 ccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaa 310  Q
    |||||||  |||| ||||||||||||| ||||||||||||| |||||||| |||||||    
T  14711651 ccacttttgtgctaatttgtccaatttttgcctatgtggcaaatgttgaccgtgcaaa 14711708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 41847237 - 41847184
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||| |||||||||||||| |||| |||| |||||||||||||    
T  41847237 ctaaaatatgcttttagtctctgcaaatatagcgaatttgagttttggtccctg 41847184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 3031600 - 3031545
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| ||| |||||||||   ||| ||||||||||||||||    
T  3031600 ctaaaatatgtttttggtccctgtaaatatggctcatttaggttttggtccctggt 3031545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 30124280 - 30124225
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||  || |||||| |||||||||||||||    
T  30124280 ctaaaatatgcttttggtccctgcaaataaagcaagtttgagttttggtccctggt 30124225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 38456787 - 38456732
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| || | ||| ||||||||||||||||    
T  38456787 ctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggt 38456732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 38658483 - 38658538
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| || |||||  ||||||||| |||| ||||||||||||||||||||    
T  38658483 ctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggt 38658538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 41357422 - 41357375
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    ||||||||||||||||||   |||||||||| ||||||||||||||||    
T  41357422 taaaatatgtttttggtcctcgcaaatatggtgagtttgggttttggt 41357375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 6783580 - 6783630
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtcc 186  Q
    ||||||||||||||||||| |||||||||||| || ||||  |||||||||    
T  6783580 ctaaaatatgtttttggtcactgcaaatatggtgaatttgaattttggtcc 6783630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 10873283 - 10873225
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||| |||||||||| |||||||||||||||||||| |  |||| |||||| |||||||    
T  10873283 tttggctaaaatatggttttggtctctgcaaatatgcctcgttttggttttagtccctg 10873225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 30124177 - 30124123
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtgg 291  Q
    ||||||||| |||| |||||||||||| ||||||| | |||||||||| ||||||    
T  30124177 aaaatagtcattggccccactttattgatgatttgacaaatttatgcccatgtgg 30124123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 20984148 - 20984201
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| |||||||||||||  |||| |||||| |||||||    
T  20984148 ctaaaatatggttttggtccctgcaaatatggctcgttttggttttagtccctg 20984201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 45516397 - 45516454
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||| |||  || |||||| |||| |||||||||||||| |||||    
T  45516397 gactaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggt 45516454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 1376940 - 1376992
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| |||||||||| || | ||||| ||||||||||||||    
T  1376940 aaatatgattttggtccctgcaaatatagccaatttggattttggtccctggt 1376992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 1385609 - 1385557
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| |||||||||| || | ||||| ||||||||||||||    
T  1385609 aaatatggttttggtccctgcaaatatagccaatttggattttggtccctggt 1385557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 34963669 - 34963609
Alignment:
Q  129 tatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||| |||||||||| |||||||| ||||||||||| |  |||| |||||| |||||||    
T  34963669 tatttggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccctg 34963609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 22204051 - 22204112
Alignment:
Q  130 atttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  22204051 atttggctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggt 22204112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 42359408 - 42359348
Alignment:
Q  131 tttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  42359408 tttggctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggt 42359348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 41933820 - 41933870
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtcc 186  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  41933820 ctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtcc 41933870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 33137285 - 33137198
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggtnnnnnnnnnntttgaaatccatccttgcaaaa 223  Q
    |||||||||||||||| || |||||||||| ||||||||||||||| |||||||||          ||||||||||||||||||||||    
T  33137285 ctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaaaaattttttttgaaatccatccttgcaaaa 33137198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 3880553 - 3880501
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  3880553 ctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccct 3880501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 32699371 - 32699319
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  32699371 ctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtccct 32699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 16573380 - 16573537
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggtnnnnnnnnnntttgaaatccatccttgcaaaannnnnnnnnnnn 235  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||          |||||||||||||| |||||||                
T  16573380 ctaaaatatgcttttggtctctacaaatatggcgaatttgggttttggtctctggtatttttttt-tttgaaatccatccctgcaaaattttttgttttt 16573478  T
Q  236 caaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcat 294  Q
     |||||||||||||| |||||||||||| ||||||| |  ||||||||||| |||||||    
T  16573479 taaaatagtctttggccccactttattgatgatttggcacatttatgcctacgtggcat 16573537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 29415654 - 29415729
Alignment:
Q  237 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagt 312  Q
    ||||||||| |||||||||| || |||||||||||||| |||| || |||||||||| ||| |||||||| |||||    
T  29415654 aaaatagtccttggacccaccttcttgctgatttgtcctatttctgtctatgtggcagatgctgactgtgtaaagt 29415729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 45618287 - 45618342
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  45618287 ctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggt 45618342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 54121757 - 54121702
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||    
T  54121757 ctaaaatatgattttgctccctgcaaatacggcgagtttgggttttggtccctggt 54121702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 34659708 - 34659761
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||||||||||  ||||||||||||||    
T  34659708 ctaaaatatgcttttggtccctgcaaatatggcgagttaaggttttggtccctg 34659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 41935126 - 41935078
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggttttggtc 41935078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 44705301 - 44705349
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||    
T  44705301 ctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggt 44705349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 3879088 - 3879143
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||| || |||||||||| |||||||||| ||||||||||||||    
T  3879088 ctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggt 3879143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 19674416 - 19674471
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||||||  ||||||||| ||||||||| |||||||||||||||    
T  19674416 ctaaaatatgcttttggtccttgcaaatatagcgagtttgagttttggtccctggt 19674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 45619788 - 45619733
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||||||| ||||||||    
T  45619788 ctaaaatatgtttttagtccctgcaaatatagcgagtttaggttttgttccctggt 45619733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 5259208 - 5259171
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtt 173  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5259208 ctaaaatatgtttttggtccctgcaaatatggcgagtt 5259171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 19675677 - 19675624
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||  ||||||||| ||||||||||||    
T  19675677 ctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccctg 19675624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 26412594 - 26412529
Alignment:
Q  124 atatatatttgactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||| |||| |||||||||| |||||||| |||||||||||||  |||| |||||| |||||||    
T  26412594 atatatttttggctaaaatatggttttggtccctgcaaatatggctcgttttggttttagtccctg 26412529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 33134893 - 33134945
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||||||||| || ||||||||||| ||||||||| | |||||||||    
T  33134893 ctaaaatatgtttttgatccctgcaaatatgacgagtttggatattggtccct 33134945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 54120759 - 54120811
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||| ||| ||||||| ||||||||| |||||||| ||||||    
T  54120759 aaatatgtttttggtttcttcaaatatagcgagtttgagttttggttcctggt 54120811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 16916067 - 16916118
Alignment:
Q  134 gactaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    |||||||||||  |||||||| |||||||||||| ||||||| |||||||||    
T  16916067 gactaaaatatacttttggtccctgcaaatatggtgagtttgagttttggtc 16916118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 40198596 - 40198631
Alignment:
Q  156 ctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||||||||||||||||||||    
T  40198596 ctgcaaatatagcgagtttgggttttggtccctggt 40198631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 42358034 - 42358089
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |  |||||| |||||| ||||||||    
T  42358034 ctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggt 42358089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 4211563 - 4211617
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctgg 190  Q
    |||||||||| |||||||| ||||||||||| |  |||| |||||||||||||||    
T  4211563 ctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccctgg 4211617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 17371901 - 17371847
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||| ||||| || ||||||||||  ||| ||||||||||||||||||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggt 17371847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 12152491 - 12152438
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||| |  |||| ||||||||||||||    
T  12152491 ctaaaatatggttttggtccctgcaaatatgtctcgttttggttttggtccctg 12152438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 14487804 - 14487857
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||| |  |||| ||||||||||||||    
T  14487804 ctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccctg 14487857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 46292394 - 46292447
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| |||||||| ||||||||||| |  |||| ||||||||||||||    
T  46292394 ctaaaatatggttttggtccctgcaaatatgcctcgttttggttttggtccctg 46292447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 5797484 - 5797536
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    ||||||||| |||||||||||||||||||| |  |||| |||||| |||||||    
T  5797484 taaaatatgattttggtctctgcaaatatgtctcgttttggttttagtccctg 5797536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 29060826 - 29060762
Alignment:
Q  248 tggacccactttattgctgatttgtccaatttatgcctatgtggcatatgttgactgtgcaaagt 312  Q
    |||||||||||| |||||||||| ||  |||| |||||| |||||| ||| |||||||| |||||    
T  29060826 tggacccactttcttgctgatttatctcatttttgcctacgtggcaaatgctgactgtgtaaagt 29060762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 35054665 - 35054713
Alignment:
Q  137 taaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtc 185  Q
    ||||||||| |||| ||| |||||||||| |||| ||||||||||||||    
T  35054665 taaaatatgattttagtccctgcaaatatagcgaatttgggttttggtc 35054713  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 38166497 - 38166545
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggt 184  Q
    |||||||||||||||  || |||||||||| |||||||||| |||||||    
T  38166497 ctaaaatatgtttttaatccctgcaaatatagcgagtttggattttggt 38166545  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 44706410 - 44706366
Alignment:
Q  147 ttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  44706410 ttttggtcactgtaaatatgacgagtttgggttttgatccctggt 44706366  T

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Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 344942 - 344994
Alignment:
Q  139 aaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  344942 aaatatgattttggtccctgcaaatatggcgagtttgggttttggtccctggt 344994  T

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Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 345954 - 345902
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  345954 ctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccct 345902  T

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Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 374337 - 374389
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccct 188  Q
    |||||||||| ||||| || |||||||||| ||||||||||||||||||||||    
T  374337 ctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtccct 374389  T

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Target: scaffold0002; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 376426 - 376381
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggtttt 181  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||    
T  376426 ctaaaatatgcttttggtccctgcaaatatagcgagtttgggtttt 376381  T

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Target: scaffold0517 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 11579 - 11524
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    ||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||    
T  11579 ctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggt 11524  T

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Target: scaffold0230 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 488 - 433
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||||||||||||    
T  488 ctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggt 433  T

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Target: scaffold0106 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 30964 - 30909
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||||||||||||    
T  30964 ctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggt 30909  T

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Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 29731 - 29786
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||   ||||||||| ||||||||||||||    
T  29731 ctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggt 29786  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 121042 - 120987
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||    
T  121042 ctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggt 120987  T

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Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 119595 - 119650
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| |||||||| |||||||||| |||| |||| |||||||||||||||    
T  119595 ctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggt 119650  T

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Target: scaffold0095 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 42812 - 42759
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctg 189  Q
    |||||||||| ||||||||  ||||||||||||||||||| |||||||||||||    
T  42812 ctaaaatatgcttttggtccttgcaaatatggcgagtttgagttttggtccctg 42759  T

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Target: scaffold0562 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 9924 - 9979
Alignment:
Q  136 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttggtccctggt 191  Q
    |||||||||| ||||| || |||||||||| |||||||||| ||||||||||||||    
T  9924 ctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggt 9979  T

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