View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4076_low_14 (Length: 237)
Name: NF4076_low_14
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4076_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 29073663 - 29073885
Alignment:
| Q |
13 |
ccctttgttatactttgtattttaccttcataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaa |
112 |
Q |
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| T |
29073663 |
ccctttgctatactttatattttaccttcataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaa |
29073762 |
T |
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| Q |
113 |
catagtaactcgtattacctcaaaacaaaaacaaaagacagtaacttacgttaattttatca-------------tttatttcttgtcctctttggtatc |
199 |
Q |
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| T |
29073763 |
catattaactcatattacctcaaaacaaaaacaaaagatagtaacttacgttaattttatcattttgaattattgtttatttcttgtcctctttggtgtc |
29073862 |
T |
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| Q |
200 |
aatgaacaatggtacattagttt |
222 |
Q |
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| T |
29073863 |
aatgaacaatggtacattagttt |
29073885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 29067097 - 29067161
Alignment:
| Q |
30 |
tattttaccttcataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaac |
94 |
Q |
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| T |
29067097 |
tattttaccttcacaaatttatcctaaatgtatttcatataatttctctcgtgtcaaatatgaac |
29067161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 11849507 - 11849287
Alignment:
| Q |
13 |
ccctttgttatactttgtattttaccttcataactttatcctaaatgtttctcatatagtttatcttgtgtcaaatgtgaacatccatttaatcatagaa |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11849507 |
ccctttgttatacttcatattttaccttcataactttatcctaaatgtatctcatatagtttatcttgtgtcaaatgtgaacatccatttagtcatagaa |
11849408 |
T |
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| Q |
113 |
catagtaactcgtattacctcaaaacaaaaacaaaagacagtaacttacgttaattttatc-------------atttatttcttgtcctctttggtatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11849407 |
catagtaactcgtattacctcaaaacaaaaacaaaagacagtaacttacgttaattttatcattttgaattattatttatttcttgtcctctttggtgtc |
11849308 |
T |
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| Q |
200 |
aatgaacaatggtacattagt |
220 |
Q |
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|||||| |||||||||||||| |
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| T |
11849307 |
aatgaaaaatggtacattagt |
11849287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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