View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4076_low_15 (Length: 220)
Name: NF4076_low_15
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4076_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 44451459 - 44451650
Alignment:
| Q |
14 |
aatattggaacgagcggccattctctttgtccgaagttttcctcttaaaaaatgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaa |
113 |
Q |
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| T |
44451459 |
aatattggaatgagcagccattctctttgtccaaagttttcctcttaaaaaatgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaa |
44451558 |
T |
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| Q |
114 |
aacacgcaaatcaattactaataacatagagtagtaagacttttgttaagcaacattgattaaaaaatgcacaataatagtaacgatatgag |
205 |
Q |
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| T |
44451559 |
aacacgcaaatcaattactaataacatagagtagtaagacttttgttaagcaacattgattaaaaaatgcacaataatagtaacgatatgag |
44451650 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 42192065 - 42192151
Alignment:
| Q |
51 |
tttcctcttaaaaaa-tgcatcaattttcttaagtttaaccattgtattgtattgctcctaaaaaacacgcaaatcaattactaataacata |
141 |
Q |
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| T |
42192065 |
tttcctcttaaaaaaatgcatcaattttgttatgtttaaccattgtatca-----ctcgtaaaaaacacacaaatcaaatactaataacata |
42192151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 44353983 - 44353940
Alignment:
| Q |
51 |
tttcctcttaaaaaatgcatcaattttcttaagtttaaccattg |
94 |
Q |
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| T |
44353983 |
tttcctcttacaaaatgcatccattttcttatgtttaaccattg |
44353940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 62092 - 62056
Alignment:
| Q |
61 |
aaaaatgcatcaattttcttaagtttaaccattgtat |
97 |
Q |
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| T |
62092 |
aaaaatgcatcaattttcttatgtttgaccattgtat |
62056 |
T |
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