View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4076_low_2 (Length: 510)

Name: NF4076_low_2
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4076_low_2
NF4076_low_2
[»] chr7 (38 HSPs)
chr7 (8-444)||(1710507-1710926)
chr7 (51-266)||(33894559-33894776)
chr7 (44-106)||(8427107-8427169)
chr7 (51-105)||(29363603-29363657)
chr7 (52-117)||(25014032-25014097)
chr7 (51-118)||(30751601-30751668)
chr7 (65-116)||(34754745-34754796)
chr7 (226-265)||(40009407-40009446)
chr7 (160-245)||(2999148-2999234)
chr7 (213-266)||(5276160-5276214)
chr7 (61-111)||(8094395-8094445)
chr7 (459-492)||(1710472-1710505)
chr7 (51-111)||(23214944-23215004)
chr7 (226-266)||(31341130-31341170)
chr7 (51-118)||(1418501-1418568)
chr7 (62-117)||(12242327-12242382)
chr7 (47-117)||(3836600-3836670)
chr7 (229-263)||(28613631-28613665)
chr7 (222-264)||(47134833-47134875)
chr7 (226-263)||(1423085-1423122)
chr7 (60-117)||(20547320-20547377)
chr7 (227-264)||(20553040-20553077)
chr7 (148-193)||(24363617-24363662)
chr7 (226-263)||(30133988-30134025)
chr7 (328-365)||(33871337-33871374)
chr7 (227-272)||(35808999-35809044)
chr7 (46-102)||(389936-389992)
chr7 (226-266)||(5373161-5373201)
chr7 (226-266)||(7513570-7513610)
chr7 (226-258)||(8445230-8445262)
chr7 (226-266)||(12234981-12235021)
chr7 (226-266)||(24973880-24973920)
chr7 (234-266)||(25670687-25670719)
chr7 (226-266)||(29574695-29574735)
chr7 (61-117)||(36598287-36598343)
chr7 (61-117)||(39542231-39542287)
chr7 (143-187)||(40428570-40428614)
chr7 (61-113)||(40734749-40734801)
[»] chr1 (53 HSPs)
chr1 (40-117)||(32515351-32515428)
chr1 (52-200)||(10199330-10199476)
chr1 (51-200)||(6292495-6292641)
chr1 (51-117)||(26400061-26400127)
chr1 (51-117)||(28467230-28467296)
chr1 (49-117)||(9507314-9507382)
chr1 (60-175)||(31517670-31517783)
chr1 (54-117)||(43420341-43420404)
chr1 (45-107)||(3215815-3215877)
chr1 (48-118)||(5157154-5157224)
chr1 (45-95)||(33527099-33527149)
chr1 (52-97)||(2832075-2832120)
chr1 (61-193)||(6279408-6279538)
chr1 (48-117)||(7252538-7252607)
chr1 (45-106)||(9602569-9602630)
chr1 (61-98)||(33975676-33975713)
chr1 (61-117)||(4363566-4363621)
chr1 (50-106)||(15581348-15581404)
chr1 (40-108)||(24460311-24460379)
chr1 (55-111)||(28837278-28837334)
chr1 (225-269)||(34619471-34619515)
chr1 (51-118)||(4549462-4549529)
chr1 (143-266)||(6231827-6231949)
chr1 (51-106)||(21002249-21002304)
chr1 (148-199)||(33722417-33722468)
chr1 (50-101)||(49282634-49282684)
chr1 (226-268)||(172275-172317)
chr1 (228-266)||(870981-871019)
chr1 (51-117)||(3319867-3319933)
chr1 (51-117)||(6659763-6659829)
chr1 (51-117)||(26866396-26866462)
chr1 (81-202)||(37811852-37811971)
chr1 (226-268)||(40304148-40304190)
chr1 (226-264)||(50319230-50319268)
chr1 (226-263)||(1232986-1233023)
chr1 (51-104)||(1565067-1565120)
chr1 (49-114)||(14559058-14559123)
chr1 (226-263)||(23895275-23895312)
chr1 (222-263)||(29794012-29794053)
chr1 (226-263)||(45145165-45145202)
chr1 (151-200)||(51929794-51929843)
chr1 (48-116)||(1662657-1662725)
chr1 (226-266)||(1730828-1730868)
chr1 (226-266)||(4549802-4549842)
chr1 (49-105)||(11893512-11893568)
chr1 (230-266)||(13037800-13037836)
chr1 (61-117)||(16980886-16980942)
chr1 (48-80)||(22416829-22416861)
chr1 (61-117)||(27807198-27807254)
chr1 (61-101)||(29793629-29793669)
chr1 (45-117)||(34668740-34668811)
chr1 (65-117)||(37272529-37272581)
chr1 (89-117)||(43371850-43371878)
[»] chr3 (42 HSPs)
chr3 (45-117)||(22667486-22667558)
chr3 (45-117)||(22724125-22724197)
chr3 (51-117)||(50211818-50211884)
chr3 (45-109)||(44014713-44014777)
chr3 (34-266)||(20192510-20192740)
chr3 (55-117)||(27795938-27796000)
chr3 (64-117)||(11041160-11041213)
chr3 (44-117)||(24158430-24158503)
chr3 (60-175)||(48588684-48588797)
chr3 (62-117)||(20210860-20210915)
chr3 (51-106)||(21872216-21872271)
chr3 (51-117)||(32663721-32663787)
chr3 (45-111)||(41057244-41057310)
chr3 (75-116)||(1810061-1810102)
chr3 (226-263)||(30669064-30669101)
chr3 (226-266)||(16790450-16790490)
chr3 (65-117)||(45590734-45590786)
chr3 (226-266)||(52413215-52413255)
chr3 (45-116)||(5407369-5407440)
chr3 (230-265)||(8007793-8007828)
chr3 (89-215)||(14548680-14548804)
chr3 (54-200)||(41644369-41644513)
chr3 (226-265)||(49465757-49465796)
chr3 (51-117)||(2413600-2413666)
chr3 (145-258)||(24887296-24887409)
chr3 (226-260)||(25964384-25964418)
chr3 (226-263)||(2128345-2128382)
chr3 (226-263)||(8142804-8142841)
chr3 (49-114)||(27294432-27294497)
chr3 (51-208)||(30321939-30322096)
chr3 (151-259)||(34254827-34254936)
chr3 (51-112)||(49605772-49605833)
chr3 (226-262)||(1395611-1395647)
chr3 (48-116)||(1395723-1395791)
chr3 (226-266)||(3757984-3758024)
chr3 (53-117)||(33880480-33880544)
chr3 (148-263)||(38462220-38462335)
chr3 (226-266)||(41028945-41028985)
chr3 (226-258)||(42808923-42808955)
chr3 (143-199)||(48528559-48528615)
chr3 (226-266)||(49546581-49546621)
chr3 (45-117)||(50015969-50016041)
[»] chr8 (37 HSPs)
chr8 (45-115)||(9700086-9700156)
chr8 (45-109)||(16162851-16162915)
chr8 (43-118)||(43393685-43393760)
chr8 (61-117)||(1664452-1664508)
chr8 (147-266)||(11795028-11795147)
chr8 (148-266)||(28769355-28769473)
chr8 (51-117)||(2487929-2487995)
chr8 (51-117)||(6496812-6496878)
chr8 (148-266)||(11188171-11188289)
chr8 (51-117)||(33553323-33553389)
chr8 (51-104)||(10488559-10488612)
chr8 (64-117)||(24326114-24326167)
chr8 (213-265)||(10383767-10383819)
chr8 (51-115)||(14926903-14926967)
chr8 (148-200)||(30277261-30277313)
chr8 (62-117)||(7918713-7918768)
chr8 (61-215)||(11415141-11415293)
chr8 (226-265)||(26215433-26215472)
chr8 (148-214)||(8062317-8062383)
chr8 (52-114)||(8629199-8629261)
chr8 (51-117)||(10062062-10062128)
chr8 (224-266)||(10114426-10114468)
chr8 (226-264)||(42597339-42597377)
chr8 (46-104)||(44236739-44236797)
chr8 (225-266)||(1112789-1112830)
chr8 (51-80)||(9130240-9130269)
chr8 (64-117)||(21130695-21130748)
chr8 (45-78)||(43717849-43717882)
chr8 (51-111)||(2606138-2606198)
chr8 (230-258)||(6950266-6950294)
chr8 (45-117)||(10075468-10075540)
chr8 (155-215)||(10075574-10075634)
chr8 (226-266)||(14482138-14482178)
chr8 (51-99)||(18331815-18331863)
chr8 (45-117)||(30191056-30191128)
chr8 (62-106)||(31884872-31884916)
chr8 (43-79)||(43393625-43393661)
[»] chr5 (45 HSPs)
chr5 (148-268)||(16889669-16889789)
chr5 (51-118)||(25720338-25720405)
chr5 (48-110)||(10771806-10771868)
chr5 (45-117)||(7550433-7550505)
chr5 (61-117)||(8090019-8090075)
chr5 (222-266)||(10391289-10391333)
chr5 (66-114)||(34975450-34975498)
chr5 (48-95)||(11615572-11615619)
chr5 (43-106)||(40335786-40335849)
chr5 (61-118)||(4855777-4855834)
chr5 (51-116)||(39257315-39257380)
chr5 (226-266)||(7096221-7096261)
chr5 (61-117)||(12407661-12407717)
chr5 (226-266)||(13224365-13224405)
chr5 (147-254)||(14295454-14295561)
chr5 (148-264)||(18704052-18704167)
chr5 (150-261)||(36638687-36638799)
chr5 (62-193)||(37611147-37611276)
chr5 (62-193)||(37787877-37788006)
chr5 (226-266)||(40048374-40048414)
chr5 (224-263)||(12460092-12460131)
chr5 (226-269)||(19113211-19113254)
chr5 (44-107)||(42034153-42034216)
chr5 (41-99)||(25705570-25705628)
chr5 (226-263)||(12407755-12407792)
chr5 (61-118)||(14980591-14980648)
chr5 (66-115)||(17259302-17259351)
chr5 (47-116)||(31723889-31723958)
chr5 (61-117)||(1084070-1084126)
chr5 (228-264)||(1773521-1773557)
chr5 (45-81)||(6938648-6938684)
chr5 (47-79)||(7674768-7674800)
chr5 (226-258)||(11615452-11615484)
chr5 (67-115)||(13781812-13781860)
chr5 (45-117)||(14599287-14599359)
chr5 (47-99)||(14706201-14706253)
chr5 (226-266)||(20982229-20982269)
chr5 (61-117)||(21782587-21782643)
chr5 (226-266)||(26516234-26516274)
chr5 (226-266)||(29588816-29588856)
chr5 (61-117)||(32849261-32849317)
chr5 (226-266)||(37063168-37063208)
chr5 (147-215)||(37588375-37588443)
chr5 (65-117)||(37968960-37969012)
chr5 (226-266)||(39128575-39128615)
[»] chr4 (42 HSPs)
chr4 (42-117)||(2996656-2996731)
chr4 (46-117)||(27123268-27123339)
chr4 (63-117)||(18628486-18628540)
chr4 (92-215)||(8074750-8074871)
chr4 (62-109)||(4691939-4691986)
chr4 (51-117)||(19429391-19429457)
chr4 (89-266)||(30207530-30207704)
chr4 (49-118)||(25896866-25896935)
chr4 (52-117)||(46860001-46860066)
chr4 (226-275)||(50745928-50745976)
chr4 (375-439)||(1312860-1312924)
chr4 (226-270)||(5131326-5131370)
chr4 (226-266)||(8422931-8422971)
chr4 (55-115)||(18512440-18512500)
chr4 (226-266)||(51555961-51556001)
chr4 (62-117)||(4071961-4072016)
chr4 (41-80)||(17822776-17822815)
chr4 (53-116)||(21157852-21157915)
chr4 (227-266)||(40709475-40709514)
chr4 (148-215)||(43824270-43824337)
chr4 (52-106)||(1017122-1017176)
chr4 (226-264)||(6364087-6364125)
chr4 (226-268)||(17125724-17125766)
chr4 (42-116)||(17975249-17975323)
chr4 (47-81)||(22845623-22845657)
chr4 (228-266)||(47970254-47970292)
chr4 (51-101)||(56186819-56186869)
chr4 (51-116)||(2977897-2977962)
chr4 (229-266)||(4191675-4191712)
chr4 (45-78)||(19394864-19394897)
chr4 (48-101)||(32420976-32421029)
chr4 (226-267)||(44138494-44138535)
chr4 (41-78)||(45104307-45104344)
chr4 (226-263)||(51044553-51044590)
chr4 (65-114)||(56007765-56007814)
chr4 (226-266)||(4471107-4471147)
chr4 (226-266)||(4798653-4798693)
chr4 (226-266)||(25487639-25487679)
chr4 (226-266)||(28623225-28623265)
chr4 (226-266)||(32066503-32066543)
chr4 (61-117)||(33534100-33534156)
chr4 (62-106)||(50298609-50298653)
[»] chr2 (46 HSPs)
chr2 (39-111)||(28803439-28803511)
chr2 (51-117)||(11513979-11514045)
chr2 (163-266)||(10143108-10143211)
chr2 (51-106)||(41170704-41170759)
chr2 (51-101)||(11063292-11063342)
chr2 (51-117)||(22878181-22878247)
chr2 (43-117)||(37474848-37474921)
chr2 (51-168)||(43456628-43456743)
chr2 (226-263)||(5045251-5045288)
chr2 (226-267)||(5133707-5133748)
chr2 (63-116)||(13866962-13867015)
chr2 (226-266)||(18962132-18962172)
chr2 (226-269)||(5998796-5998839)
chr2 (42-117)||(6547972-6548047)
chr2 (43-106)||(15370236-15370299)
chr2 (226-265)||(32821746-32821785)
chr2 (51-106)||(40944007-40944062)
chr2 (148-215)||(41817155-41817222)
chr2 (227-266)||(44443256-44443295)
chr2 (42-116)||(3078520-3078594)
chr2 (51-117)||(4350773-4350839)
chr2 (60-102)||(25609894-25609936)
chr2 (53-103)||(33981220-33981270)
chr2 (48-102)||(40158816-40158870)
chr2 (227-264)||(8820368-8820405)
chr2 (61-118)||(9996820-9996877)
chr2 (51-84)||(30990360-30990393)
chr2 (41-118)||(32364642-32364719)
chr2 (229-266)||(41033047-41033084)
chr2 (49-106)||(42852621-42852678)
chr2 (226-263)||(44606182-44606219)
chr2 (147-187)||(1647251-1647291)
chr2 (226-266)||(3102629-3102669)
chr2 (226-266)||(4026753-4026793)
chr2 (46-110)||(5045084-5045148)
chr2 (61-117)||(9478382-9478438)
chr2 (226-266)||(10190215-10190255)
chr2 (228-264)||(23747242-23747278)
chr2 (226-266)||(25609732-25609772)
chr2 (226-266)||(28902013-28902053)
chr2 (226-266)||(30990463-30990503)
chr2 (226-266)||(32098402-32098442)
chr2 (148-263)||(32694151-32694266)
chr2 (226-266)||(34054995-34055035)
chr2 (45-101)||(40759259-40759315)
chr2 (61-117)||(43141955-43142011)
[»] chr6 (37 HSPs)
chr6 (46-117)||(2460067-2460138)
chr6 (51-111)||(35070388-35070448)
chr6 (227-266)||(33416321-33416360)
chr6 (48-118)||(24973945-24974015)
chr6 (71-187)||(34538159-34538273)
chr6 (62-118)||(8420129-8420185)
chr6 (45-101)||(12111066-12111122)
chr6 (226-262)||(20370839-20370875)
chr6 (230-266)||(33259752-33259788)
chr6 (148-258)||(281864-281974)
chr6 (51-118)||(1432221-1432288)
chr6 (61-100)||(9667916-9667955)
chr6 (51-117)||(27894116-27894182)
chr6 (45-106)||(2457035-2457096)
chr6 (228-265)||(3171527-3171564)
chr6 (150-266)||(4006650-4006766)
chr6 (229-266)||(4247731-4247768)
chr6 (74-115)||(10353705-10353746)
chr6 (150-187)||(29957940-29957977)
chr6 (229-266)||(31461614-31461651)
chr6 (224-265)||(31624195-31624236)
chr6 (44-117)||(32171297-32171370)
chr6 (226-266)||(2034533-2034572)
chr6 (226-266)||(2514638-2514678)
chr6 (230-266)||(2727954-2727990)
chr6 (64-120)||(3155255-3155311)
chr6 (61-105)||(3738196-3738240)
chr6 (61-101)||(6742910-6742950)
chr6 (226-266)||(10452454-10452494)
chr6 (45-73)||(12811391-12811419)
chr6 (226-266)||(28621204-28621244)
chr6 (226-266)||(29274323-29274363)
chr6 (226-266)||(29940732-29940772)
chr6 (61-117)||(30865566-30865622)
chr6 (61-117)||(32917280-32917336)
chr6 (89-125)||(32997591-32997627)
chr6 (226-266)||(33068655-33068695)
[»] scaffold0199 (1 HSPs)
scaffold0199 (61-117)||(6893-6949)
[»] scaffold0110 (2 HSPs)
scaffold0110 (231-266)||(35895-35930)
scaffold0110 (73-117)||(35775-35819)
[»] scaffold0050 (1 HSPs)
scaffold0050 (39-77)||(58865-58903)
[»] scaffold0141 (1 HSPs)
scaffold0141 (44-113)||(9692-9761)
[»] scaffold0590 (1 HSPs)
scaffold0590 (226-266)||(1168-1208)
[»] scaffold0275 (1 HSPs)
scaffold0275 (226-266)||(2767-2807)
[»] scaffold0020 (1 HSPs)
scaffold0020 (45-97)||(159888-159940)
[»] scaffold0428 (1 HSPs)
scaffold0428 (230-266)||(3840-3876)
[»] scaffold0060 (1 HSPs)
scaffold0060 (226-258)||(63379-63411)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 1710926 - 1710507
Alignment:
Q  8 agataatacttcagtttatacaaatatctctatttaaggcctatttg-----gattagcttatttgagcttatctactaacacaatcacttgtgagactg 102  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||     |||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  1710926 agatgatacttcattttatacaaatatctctgtttaaggcttatttgaattagattagcttatttgagcttatctactaacataatcccttgtgacactg 1710827  T
Q  103 tttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttaca 202  Q
    ||||| | || |||    ||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||                   
T  1710826 tttgaaa-agtttaag--aaaacagcttacaacatctccataaactgttttcagcttatttccataacctctctagaatagctta--------------- 1710745  T
Q  203 ccttatataaaaaacggtctgacttattttatcttttgttataaaaacagcttatacataagcaatttatcatcacttatgttataagccattaattttg 302  Q
         |||||||| |||| | | ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||||    
T  1710744 -----tataaaaa-cggtataatttattttatctttcgttataaaaacagcttagacataagcaatttatcagcactaatgtaataagccattaattttg 1710651  T
Q  303 tttatccaagcagagccttaataactgagcttatctacttacataaacacttgcaatactattccgattaaccgaaaacaagttataacatatccatat- 401  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||     
T  1710650 tttatccaagcagagccttaataattgagcttatctacttacataaacacttacaatactattccgaataaccgaaaacaagttataacatatccatata 1710551  T
Q  402 -actgtttccagctcatttccataaagtctccaaaatagctata 444  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  1710550 aactgtttccagctcatttccataaagtctccaaaatagctata 1710507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 33894776 - 33894559
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 150  Q
    |||||||||||||||||||||||||| | | ||| || |||||||||||||||||| |||||||  ||| ||||||||  |  |||| | | |||  |||    
T  33894776 tttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagct--tatgaaaacagcatatgacatgtccataagttgt 33894679  T
Q  151 tttcagctaatttccataacctctctagaatagcttacg-----aaaaaagcttacaccttatataaaaaacggtctgacttattttatcttttgttata 245  Q
    |||||||| ||||| |||| || || || |||||||| |     |||| | | || | |||||||  ||||| || ||||||||||||||||||||||||    
T  33894678 tttcagcttatttcaataaactttccaggatagcttaagttgtaaaaacaacataaagcttatat-gaaaacagtttgacttattttatcttttgttata 33894580  T
Q  246 aaaacagcttatacataagca 266  Q
     ||| ||||||||||||||||    
T  33894579 gaaatagcttatacataagca 33894559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 8427169 - 8427107
Alignment:
Q  44 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||||||||||   ||||||||||||||||||||||| ||  |||||||||||||||||    
T  8427169 aggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 29363657 - 29363603
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 105  Q
    |||||||| |||||||||| |||||||||||||| || |||||||||||||||||    
T  29363657 tttggattggcttatttgaacttatctactaacataagcacttgtgagactgttt 29363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 25014097 - 25014032
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||||||  ||||||||| |||||| ||||||| |||||||||||||||| ||||    
T  25014097 ttggattagtttatttgaatttatctactgacacaagcacttgtaagactgtttgagagagtttat 25014032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 30751668 - 30751601
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||| ||||||| | |||||||||| ||| || |||||||| ||||||||| |||||||||||    
T  30751668 tttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttata 30751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 34754745 - 34754796
Alignment:
Q  65 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    |||||||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  34754745 tttgagcttatctattgacacaaacacttatgagactgtttgagagagctta 34754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 40009446 - 40009407
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagc 265  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  40009446 ttattttgtcttttgttataaaaacagcttatacataagc 40009407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 2999234 - 2999148
Alignment:
Q  160 atttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttata 245  Q
    ||||||||||  ||| ||||||||||||   ||| | |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  2999234 atttccataagatctttagaatagcttaaagaaacaacttacatcttatatgaaaaacggtttgactttattttatcttttgttata 2999148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 5276214 - 5276160
Alignment:
Q  213 aaaacggtctgactt-attttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||| |||||| || ||||||||||||||||||| ||||||||||||||||    
T  5276214 aaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagca 5276160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 8094445 - 8094395
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagaga 8094395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 459 - 492
Target Start/End: Complemental strand, 1710505 - 1710472
Alignment:
Q  459 cttatataaaaagagcttatacataagcacttat 492  Q
    ||||||||||||||||||||||||||||||||||    
T  1710505 cttatataaaaagagcttatacataagcacttat 1710472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 23215004 - 23214944
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    ||||||||  ||||||||| ||||||||||| || || ||||| |||||||||||||||||    
T  23215004 tttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagaga 23214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 31341170 - 31341130
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  31341170 ttattttatcttttgttatacaaatagcttatacataagca 31341130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 1418568 - 1418501
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||  ||||||||||||||||||||  || || ||||| |||| ||||||| |||||||||||    
T  1418568 tttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttata 1418501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 12242382 - 12242327
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| | ||||||| ||| || | |||||||||||||||||||||||||||    
T  12242382 ttatttgaggtgatctactgacataacctcttgtgagactgtttgagagagcttat 12242327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 3836600 - 3836670
Alignment:
Q  47 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||  ||||||||||||||||||||  |  || ||||||||| |||||||| |||| |||||    
T  3836600 cctatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttat 3836670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 28613631 - 28613665
Alignment:
Q  229 ttttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||||||||| |||||||||||||    
T  28613631 ttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 47134833 - 47134875
Alignment:
Q  222 tgacttattttatcttttgttataaaaacagcttatacataag 264  Q
    ||||||||||||||||| |||||||||| |||||||| |||||    
T  47134833 tgacttattttatctttggttataaaaatagcttatagataag 47134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 1423122 - 1423085
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  1423122 ttattttatcttttgttatgaaaatagcttatacataa 1423085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 20547320 - 20547377
Alignment:
Q  60 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| || ||||||| | ||| || ||||||||| |||||||||||||||||||    
T  20547320 gcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttat 20547377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 20553077 - 20553040
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataag 264  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  20553077 tattttattttttgttataaaaacagcttatacgtaag 20553040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 24363617 - 24363662
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaa 193  Q
    ||||||||||| |||||||||||||||| || |||||||| |||||    
T  24363617 tgttttcagcttatttccataacctctccaggatagcttatgaaaa 24363662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 30134025 - 30133988
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  30134025 ttattttatcttttgttgtaaaaatagcttatacataa 30133988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 33871374 - 33871337
Alignment:
Q  328 tgagcttatctacttacataaacacttgcaatactatt 365  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  33871374 tgagcttatctacttacataaacacttgcgaaactatt 33871337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 35808999 - 35809044
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataagcaatttat 272  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||    
T  35808999 tattttatcttttgttatagaaatagcttatacataaacactttat 35809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 389992 - 389936
Alignment:
Q  46 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 102  Q
    ||||||||||||| |||||||||||| ||||||||  || ||  |||||||||||||    
T  389992 gcctatttggattggcttatttgagcctatctacttccataagtacttgtgagactg 389936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 5373201 - 5373161
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  5373201 ttattttatcttttgttatagaaatagcatatacataagca 5373161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 7513610 - 7513570
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||  |||||| ||||||||||||||||    
T  7513610 ttattttatcttttgtcttaaaaatagcttatacataagca 7513570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 8445262 - 8445230
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttata 258  Q
    |||||||||||||||||||||||| ||||||||    
T  8445262 ttattttatcttttgttataaaaatagcttata 8445230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 12234981 - 12235021
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||| ||| | ||||||||||||||||||    
T  12234981 ttattttatcttttgtcatacatacagcttatacataagca 12235021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 24973920 - 24973880
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||| ||||||||||    
T  24973920 ttattttatcttttgttatagaaatagcttttacataagca 24973880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 25670687 - 25670719
Alignment:
Q  234 tcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||| ||||||||||||||||    
T  25670687 tcttttgttataaaaatagcttatacataagca 25670719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 29574695 - 29574735
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||| ||||||||| ||||||| ||||||||||||||||    
T  29574695 ttatttcatcttttgtcataaaaatagcttatacataagca 29574735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 36598287 - 36598343
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| |||| ||||| ||| || || |||||||| |||||||||||||||||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttat 36598343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 39542231 - 39542287
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||| |||||||||| || || |||||| ||||| |||| |||||||||||    
T  39542231 cttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttat 39542287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 40428614 - 40428570
Alignment:
Q  143 taaactgttttcagctaatttccataacctctctagaatagctta 187  Q
    |||||||||||||||| |||||||||| |||| ||| ||||||||    
T  40428614 taaactgttttcagcttatttccataagctctttaggatagctta 40428570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 40734749 - 40734801
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 113  Q
    |||| ||||||||||||||||| | ||  |||||||||| |||||||||||||    
T  40734749 cttacttgagcttatctactaatataaatacttgtgagattgtttgagagagc 40734801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 32515351 - 32515428
Alignment:
Q  40 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||||| || |||||||||||||||||| ||||||||||    
T  32515351 tttatggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 10199330 - 10199476
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgtt 151  Q
    |||||||  |||||||||||||||||||||||| || ||||||||| ||| |||| |||| || ||   |||| |||| |  |||| ||| |||  ||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatg--aaaatagcttatgacatgttcataagttgtt 10199427  T
Q  152 ttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 200  Q
    ||||||| |||| ||||| ||||||| ||||||||| ||||||||||||    
T  10199428 ttcagcttattttcataagctctctaaaatagcttatgaaaaaagctta 10199476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 6292641 - 6292495
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 150  Q
    ||||||||  |||||||||||||||||||| ||| || ||||| ||||| |||||| ||||  ||   | ||||||||| |  |||| ||| ||| ||||    
T  6292641 tttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattt---ttaaaacagcttatgacatgttcataagctgt 6292545  T
Q  151 tttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 200  Q
    |||||||| |||| ||||| ||||| | ||||| ||||||||| ||||||    
T  6292544 tttcagcttattttcataagctctccaaaatagtttacgaaaatagctta 6292495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 26400127 - 26400061
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| ||||||||||| |||| ||||| || ||| |||||||||| |||||||||||||||||    
T  26400127 tttggatttgcttatttgagattatatactagcataataacttgtgagattgtttgagagagcttat 26400061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 28467230 - 28467296
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| |||| |||||||||||||| | |||||| ||||||||| |||||||| ||||||||||    
T  28467230 tttggattggcttgtttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttat 28467296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 9507382 - 9507314
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||| ||| |||||||||||||||||||||| || |  || ||||||||||||||| ||||||||||    
T  9507382 tatttgaatttgcttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 31517670 - 31517783
Alignment:
Q  60 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 159  Q
    |||||||||||||||| ||||  || || |||||||||||||||||| |||| ||  ||| |||||| ||||  |||| ||| ||| ||||||||||||     
T  31517670 gcttatttgagcttatttactggcataagcacttgtgagactgtttgggagaact--tatcaaaacaactcatgacatgttcataagctgttttcagctt 31517767  T
Q  160 atttccataacctctc 175  Q
    |||| ||||| |||||    
T  31517768 attttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 43420404 - 43420341
Alignment:
Q  54 ggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||| |||| |||||    
T  43420404 ggattagcttatttgagcttatctacagacataaacacttgtgagactgcttgtgagatcttat 43420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 3215877 - 3215815
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 107  Q
    ||||||||||||||| |||||||||| |||| || ||||| || || ||||||||||||||||    
T  3215877 ggcctatttggattatcttatttgagtttatttattaacataagcatttgtgagactgtttga 3215815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 5157224 - 5157154
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||||||||||  ||||||||| |||||||||  ||| || ||||||||| |||||||| |||||||||||    
T  5157224 ctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttata 5157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 33527099 - 33527149
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgt 95  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| |||||||    
T  33527099 ggccaatttggattaccttatttgagcttatctgctaacacaagcacttgt 33527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2832120 - 2832075
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtga 97  Q
    |||||||||||||||||||||||||||||| || || |||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcataagcacttgtga 2832075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 6279538 - 6279408
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaa 160  Q
    ||||||| |||||| ||||| ||| || |||||||| | |||||||||||||||  |||  |||||| | || |||| | | |||  ||||||||||  |    
T  6279538 cttatttcagcttaactactgacataagcacttgtgtggctgtttgagagagct--tatggaaacagttaaccacatgtccataagttgttttcagcgta 6279441  T
Q  161 tttccataacctctctagaatagcttacgaaaa 193  Q
    ||||||||| |||||||| |||||||| |||||    
T  6279440 tttccataagctctctaggatagcttatgaaaa 6279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 7252538 - 7252607
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||| ||||||||||||||||| ||||||||||| ||  ||||| || |||||||| |||| |||||    
T  7252538 ctatttgaattagcttatttgagctaatctactaacataagtacttgagaaactgtttgggagaacttat 7252607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 9602569 - 9602630
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||||||||||||  ||||| |||||||||||||||||  || ||||||||||||| ||||    
T  9602569 ggcctatttggattgacttatctgagcttatctactaacttaagcacttgtgagactatttg 9602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 33975713 - 33975676
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgag 98  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33975713 cttatttgagcttatctactaacacaagcacttgtgag 33975676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 4363566 - 4363621
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||||||    
T  4363566 cttatttgagcttatctacttacataat-acttgtgagattgtttgagagcgcttat 4363621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 15581404 - 15581348
Alignment:
Q  50 atttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||||| |||||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  15581404 atttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttg 15581348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 24460311 - 24460379
Alignment:
Q  40 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgag 108  Q
    |||| ||||| ||||||||  ||||||||| |||||||||| |||  | ||||||||||||||||||||    
T  24460311 tttagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttgag 24460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 28837278 - 28837334
Alignment:
Q  55 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    |||| ||||||||||||||||||||| ||| || |||||| |||||||||| |||||    
T  28837278 gattggcttatttgagcttatctactgacataagcacttgagagactgtttaagaga 28837334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 34619471 - 34619515
Alignment:
Q  225 cttattttatcttttgttataaaaacagcttatacataagcaatt 269  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||    
T  34619471 cttattttatcttttgttatagaaatggcttatacataagcaatt 34619515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 4549462 - 4549529
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||||||| ||||||||||| |||||||||  || || || || |||||||||||| |||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttata 4549529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 6231827 - 6231949
Alignment:
Q  143 taaactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgacttattttatcttttgtt 242  Q
    |||||||||||||||| ||||| ||||  |||  ||  ||||||||||||| |||||| |  |||||| |||||| || ||||||  |||||| || |||    
T  6231827 taaactgttttcagcttatttctataagttcttcaggttagcttacgaaaacagcttatagattatatgaaaaacagtttgactttatttatc-ttggtt 6231925  T
Q  243 ataaaaacagcttatacataagca 266  Q
    ||||||| | || |||||||||||    
T  6231926 ataaaaagacctaatacataagca 6231949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 21002304 - 21002249
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||| |||||||||||||||||||||  || ||  |||||||||||||||||    
T  21002304 tttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttg 21002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 33722417 - 33722468
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctt 199  Q
    ||||||||||| ||||||||||||||| ||| ||| |||| |||||||||||    
T  33722417 tgttttcagcttatttccataacctctgtaggataacttatgaaaaaagctt 33722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 49282634 - 49282684
Alignment:
Q  50 atttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    ||||||||||||||||||||| || |||||||||| || |||||||||||||    
T  49282634 atttggattagcttatttgag-ttgtctactaacataaacacttgtgagact 49282684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 172317 - 172275
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaat 268  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  172317 ttattttatctttagttatagaaatagcttatacataagcaat 172275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 871019 - 870981
Alignment:
Q  228 attttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||| || |||||||||||||    
T  871019 attttatcttttgttataaaaatagtttatacataagca 870981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 3319867 - 3319933
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  ||||||||||||||||||||| || || || || |||||||| |||| |||||||||    
T  3319867 tttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttat 3319933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 6659829 - 6659763
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  ||||||| ||||||||||||| || || ||||||||||||| |||| || |||||||    
T  6659829 tttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttat 6659763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 26866462 - 26866396
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  ||||||| |||||||||||||||||||  |||| ||||||| ||||  |||||||||    
T  26866462 tttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttat 26866396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 37811971 - 37811852
Alignment:
Q  81 aacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaa 180  Q
    |||||||||| |||||| |||| |||||||| |||||   ||||||||| |  |||| ||| ||||||||||||| || |||||||| | ||||| |  |    
T  37811971 aacacaatcatttgtgatactggttgagagaacttatg--aaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatga 37811874  T
Q  181 tagcttacgaaaaaagcttaca 202  Q
    | ||||| ||||| ||||||||    
T  37811873 tggcttatgaaaacagcttaca 37811852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 40304148 - 40304190
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaat 268  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  40304148 ttattttatcttttgttatataaatagcttatacctaagcaat 40304190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 50319268 - 50319230
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataag 264  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  50319268 ttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 1232986 - 1233023
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  1232986 ttattttatgttttgttataaaaacagcttatgcataa 1233023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 1565067 - 1565120
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 104  Q
    ||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||||    
T  1565067 tttggattaacttttttgagattatctactagcacaagcacttgtgagagtgtt 1565120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 14559123 - 14559058
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 114  Q
    |||||||||||||||||||||| ||||||||| ||| || || ||| |||| |||||  |||||||    
T  14559123 tatttggattagcttatttgaggttatctactgacataaacatttgcgagattgtttaggagagct 14559058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 23895312 - 23895275
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  23895312 ttattttatcttttgttatagaaatagcttatacataa 23895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 29794012 - 29794053
Alignment:
Q  222 tgacttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||||| ||||| ||| |||||||||    
T  29794012 tgacttattttatcttttgttacaaaaatagcctatacataa 29794053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 45145202 - 45145165
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  45145202 ttattttatcttttgctataaaaatagcttatacataa 45145165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 51929794 - 51929843
Alignment:
Q  151 tttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 200  Q
    |||| ||| |||||||||| ||||||||||||||||| ||||| ||||||    
T  51929794 tttcggcttatttccataagctctctagaatagcttatgaaaacagctta 51929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 1662725 - 1662657
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    |||||| |||| |||||||||||||||||||||| || ||  || || |||||| |||| |||||||||    
T  1662725 ctatttagattggcttatttgagcttatctactagcataagtacatgcgagactatttgcgagagctta 1662657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 1730868 - 1730828
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||| |||| ||||| ||||||||||||||||    
T  1730868 ttattttatctttggttaaaaaaatagcttatacataagca 1730828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 4549842 - 4549802
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||| ||||||||||    
T  4549842 ttattttatcttttgttatagaaatagcttgtacataagca 4549802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 11893512 - 11893568
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 105  Q
    ||||||||||  ||||||||| ||||||||||| |||||  |||||||||| |||||    
T  11893512 tatttggattgacttatttgaacttatctactagcacaaatacttgtgagattgttt 11893568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 13037836 - 13037800
Alignment:
Q  230 tttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagca 13037800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 16980942 - 16980886
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||| ||| |||| ||  |||||||||||| |||||||||||||||    
T  16980942 cttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttat 16980886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 22416829 - 22416861
Alignment:
Q  48 ctatttggattagcttatttgagcttatctact 80  Q
    ||||||||||| |||||||||||||||||||||    
T  22416829 ctatttggattggcttatttgagcttatctact 22416861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 27807254 - 27807198
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||| |||||| ||| || || |||| |||||||||||||||||||||    
T  27807254 cttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttat 27807198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 29793629 - 29793669
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  29793629 cttatttgagcttatctactgacataaacacttgtgagact 29793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 34668811 - 34668740
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||| ||||||||||| |||| |||| |||  | |||||||||| |||||||  |||||||||    
T  34668811 ggcctatttggattggcttatttgagtttatgtactgacatgagcacttgtgag-ctgtttggaagagcttat 34668740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 37272529 - 37272581
Alignment:
Q  65 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||||||  |  || ||||||||||| |||||||||||||||||    
T  37272529 tttgagcttatctactggcttaagcacttgtgagattgtttgagagagcttat 37272581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 43371850 - 43371878
Alignment:
Q  89 cacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||||||||||||||    
T  43371850 cacttgtgagactgtttgagagagcttat 43371878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 22667558 - 22667486
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22667486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 22724197 - 22724125
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22724125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 50211884 - 50211818
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||||||||| |||||    
T  50211884 tttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttat 50211818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 44014713 - 44014777
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 109  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  44014713 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 44014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 266
Target Start/End: Original strand, 20192510 - 20192740
Alignment:
Q  34 tctctatttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcaca 133  Q
    ||||| || ||||||| ||||||||  || |||| |  ||||||| | ||| || ||||| | | ||||| |||||||||||||| |||  ||||| |      
T  20192510 tctcttttgaaggcctgtttggattgactaatttcaatttatctattgacataagcacttcttacactgtatgagagagcttatagaaa--cagcttatg 20192607  T
Q  134 acatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgactt-atttt 232  Q
    |||| | | ||| ||||||||| || |||||||||| |||||  |||||  |||| |||| |||||| |  |||||| |||| | || |||||| |||||    
T  20192608 acatgtccataagctgttttcaactcatttccataagctctcccgaataagttacaaaaacagcttatagattatatgaaaa-ctgtttgactttatttt 20192706  T
Q  233 atcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||| ||| ||||||||||||||||    
T  20192707 atcttttgttatataaatagcttatacataagca 20192740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 27795938 - 27796000
Alignment:
Q  55 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||||||||||||||||  || || ||||||||| ||||||| |||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 11041160 - 11041213
Alignment:
Q  64 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||||||||| | || |||||||| ||||||||||||||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttat 11041213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 24158430 - 24158503
Alignment:
Q  44 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||| |||||||||| |||||||| |||||||||||| ||| ||  |||||||| |||||||| ||||||||||    
T  24158430 aggcatatttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttat 24158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 48588797 - 48588684
Alignment:
Q  60 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 159  Q
    |||||||||| ||||| |||| | |||| || |||||||| || |||||||||||||||||||  || || |  |||| ||| |||| ||||||||||||    
T  48588797 gcttatttgaacttatttacttatacaaacatttgtgagattgcttgagagagcttatataaa--caacttatgacatgttcttaaagtgttttcagcta 48588700  T
Q  160 atttccataacctctc 175  Q
    ||||||| || |||||    
T  48588699 atttccacaaactctc 48588684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 20210860 - 20210915
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||||||| ||| || ||||||||||||||||||||||| |||||    
T  20210860 ttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttat 20210915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 21872216 - 21872271
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||||||| ||||||||| |||||||||| ||| || ||||||||||||||||||    
T  21872216 tttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 32663787 - 32663721
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| ||||||||||||||||||||  ||| |  ||||||||||||| |||||||||| ||||    
T  32663787 tttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttat 32663721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 41057310 - 41057244
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    |||||||||| ||| ||||||||||||||||||||   || || |||||||||||||||||| ||||    
T  41057310 ggcctatttgaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggaga 41057244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1810102 - 1810061
Alignment:
Q  75 tctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagctta 1810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 30669064 - 30669101
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30669064 ttattttatcttttgttataaaaatagcttatacataa 30669101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 16790450 - 16790490
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  16790450 ttattttatctgttgttataaaaatagcttatacataagca 16790490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 45590786 - 45590734
Alignment:
Q  65 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| ||||||||||| || || |||||||||||||||||| ||||||||||    
T  45590786 tttgaacttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 52413215 - 52413255
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  52413215 ttattctatcttttgttataaaaatagcttatacataagca 52413255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 5407369 - 5407440
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||| |||| ||||||||||||||||||||||| | | | |||||||||||| | ||||||  ||||||||    
T  5407369 ggcctgtttgcattagcttatttgagcttatctattgatataatcacttgtgatattgtttggcagagctta 5407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 8007793 - 8007828
Alignment:
Q  230 tttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||| |||||||||||||||||||    
T  8007793 tttatcttttgttatagaaacagcttatacataagc 8007828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 14548680 - 14548804
Alignment:
Q  89 cacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttac 188  Q
    ||||||||||||||||||||||||||  ||| |||||| |  |  |||| ||  ||  |||||||||||| |||||||||| ||||| |||||| ||||     
T  14548680 cacttgtgagactgtttgagagagct--tatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccagaataacttat 14548777  T
Q  189 gaaaaaagcttacaccttatataaaaa 215  Q
    ||||| | |||| | ||||||| ||||    
T  14548778 gaaaacaacttatagcttatatgaaaa 14548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 41644369 - 41644513
Alignment:
Q  54 ggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgtttt 153  Q
    |||||| ||| ||||||||||||||||| || || |||||| || |||||||  |||| ||||||  |||||| ||    |||| ||| ||| |||||||    
T  41644369 ggattaacttctttgagcttatctactagcataagcacttgagacactgtttaggagaacttata--aaaacaacttgggacattttcataagctgtttt 41644466  T
Q  154 cagctaatttccataacctctctagaatagcttacgaaaaaagctta 200  Q
    ||||| |||||| |||  ||||||  |||||||| ||||| ||||||    
T  41644467 cagcttatttccttaagatctctacgatagcttatgaaaacagctta 41644513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 49465757 - 49465796
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  49465757 ttattttatcttttgttataaaaatagcttacacataagc 49465796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 2413600 - 2413666
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  ||||||||| || ||||| || || |||||||||| || ||||||||||||||||||    
T  2413600 tttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttat 2413666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 24887296 - 24887409
Alignment:
Q  145 aactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgtta 243  Q
    |||||||||||||| ||| |||||| ||||| || |||||||| ||||| |||||  | |||||||  || || || |||| ||||||||||| ||||||    
T  24887296 aactgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatat-gaatacagtttgactttattttatctattgtta 24887394  T
Q  244 taaaaacagcttata 258  Q
    || ||| ||||||||    
T  24887395 tagaaatagcttata 24887409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 25964418 - 25964384
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttataca 260  Q
    |||||||||||||||||||||||| ||||||||||    
T  25964418 ttattttatcttttgttataaaaatagcttataca 25964384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 2128345 - 2128382
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  2128345 ttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 8142804 - 8142841
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  8142804 ttattttatcttttgatataaaaatagcttatacataa 8142841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 27294497 - 27294432
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 114  Q
    |||||| ||| ||||| ||||| ||||||| |  || || ||||||||||||||||||||||||||    
T  27294497 tatttgaattggcttacttgagtttatctattgtcataagcacttgtgagactgtttgagagagct 27294432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 30321939 - 30322096
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 150  Q
    ||||||| | ||| ||||||||||| |||| ||| || ||| | ||| |||||||| |||| | |||| |||||||||| | ||||| ||  ||| ||||    
T  30321939 tttggatgaacttctttgagcttatttactgacataaacacctatgaaactgtttgggagaacatataaaaaaacagcttagaacatatttataagctgt 30322038  T
Q  151 tttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttat 208  Q
     ||||  | |||||||||| |||| ||| ||| |||| ||||| | |||||| |||||    
T  30322039 gttcaatttatttccataagctctttaggataacttatgaaaacaacttacagcttat 30322096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 34254827 - 34254936
Alignment:
Q  151 tttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttataaaaa 249  Q
    |||||||| |||| |||||  |||| ||||||||||| ||||| || ||| | || ||||||||||| || |||| |||||||||| |||| || | |||    
T  34254827 tttcagcttatttacataagttctccagaatagcttatgaaaatagtttatagctaatataaaaaacagtttgactttattttatcatttgctacagaaa 34254926  T
Q  250 cagcttatac 259  Q
     |||||||||    
T  34254927 tagcttatac 34254936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 49605772 - 49605833
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagag 112  Q
    |||||||||| ||||||||| |||||| ||| || ||  |||||||||| ||||||||||||    
T  49605772 tttggattagtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagag 49605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 1395647 - 1395611
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacata 262  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  1395647 ttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 1395791 - 1395723
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||||| |||  |||||||||||||||||  | ||  || |||||| |||||||||||||||||||||    
T  1395791 ctatttgtattgacttatttgagcttatcttatgacgtaagcacttgcgagactgtttgagagagctta 1395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 3758024 - 3757984
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||| |||||||| ||||| ||||||||||||||||    
T  3758024 ttattttatattttgttacaaaaatagcttatacataagca 3757984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 33880480 - 33880544
Alignment:
Q  53 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||| ||||||||||||||||||| | ||| ||||| ||| || |||||||| |||| |||||    
T  33880480 tggattggcttatttgagcttatctattgacataatcatttgagaaactgtttgggagaacttat 33880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 38462335 - 38462220
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgactt-attttatcttttgttataa 246  Q
    ||||||||||| |||||||||| || ||| | |||||||| ||||| || ||| | | ||||| |||| | || |||||| ||||||||||||| ||||     
T  38462335 tgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaa-cagtttgactttattttatcttttggtatag 38462237  T
Q  247 aaacagcttatacataa 263  Q
    ||| |||||||| ||||    
T  38462236 aaatagcttataaataa 38462220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 41028945 - 41028985
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  41028945 ttattttttcttttgttatagaaatagcttatacataagca 41028985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 42808955 - 42808923
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttata 258  Q
    |||||||||||||||||||| ||||||||||||    
T  42808955 ttattttatcttttgttatagaaacagcttata 42808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 48528615 - 48528559
Alignment:
Q  143 taaactgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctt 199  Q
    ||||| |||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||    
T  48528615 taaacagttttcagcttatttctataaactctccagaatagcttatgaaaacagctt 48528559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 49546581 - 49546621
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  49546581 ttattttatcttttgttataaaaatatcttacacataagca 49546621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 50016041 - 50015969
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| |||||||| |||||| | || ||||||| |  || || ||||||||||||||||||||||| |||||    
T  50016041 ggcctctttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttat 50015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 9700156 - 9700086
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    ||||| ||||||||| ||||||||||||||||||||| || || ||||||||||||| |||||||||||||    
T  9700156 ggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 16162915 - 16162851
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 109  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  16162915 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 16162851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 43393685 - 43393760
Alignment:
Q  43 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||||||||||  ||||||| ||||||||||||  || || ||||| |||||||||||| |||||||||||    
T  43393685 aaggcctatttggattgacttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 43393760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 1664508 - 1664452
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 11795147 - 11795028
Alignment:
Q  147 ctgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttata 245  Q
    |||||||||||| |||||||||| ||||| | ||||||||| ||||  |||||| | |||||||  ||||| || |||| ||||| ||| |||||| |||    
T  11795147 ctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatat-gaaaacagtgtgactttattgtatgttttgtcata 11795049  T
Q  246 aaaacagcttatacataagca 266  Q
     ||| ||||||||||||||||    
T  11795048 gaaaaagcttatacataagca 11795028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 28769355 - 28769473
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgactt-attttatcttttgttataa 246  Q
    ||||||||||| |||||||||| ||||| | ||||||||| ||||| |||||| | |||||| | ||||  || |||||| |||||||  |||||||||     
T  28769355 tgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttata-agaaaatagtttgacttaattttatagtttgttatag 28769453  T
Q  247 aaacagcttatacataagca 266  Q
     || ||||||||||||||||    
T  28769454 gaatagcttatacataagca 28769473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 2487929 - 2487995
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| ||||||||||| | ||||||| ||| || |||||||||||||||||| |||| |||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttat 2487995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 6496812 - 6496878
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  ||| |||||| ||||||||||||| ||||||||||| ||||||||| || |||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttat 6496878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 11188171 - 11188289
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgacttattttatcttttgttataaa 247  Q
    ||||||||| | ||| |||||| |||||||| ||||||||  |||| || ||| | || |||||||||  | |  |  |||||||||||||||||||| |    
T  11188171 tgttttcagtttattaccataaactctctaggatagcttatcaaaatagtttataactaatataaaaatagtttggttttattttatcttttgttataga 11188270  T
Q  248 aacagcttatacataagca 266  Q
    |||| ||||||||||||||    
T  11188271 aacaacttatacataagca 11188289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 33553389 - 33553323
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||  |||||||  |||||||||    
T  33553389 tttggattagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 33553323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 10488612 - 10488559
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 104  Q
    |||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||    
T  10488612 tttggattggcttatttgagcttatcaactaacataaacacatgtgagactgtt 10488559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 24326167 - 24326114
Alignment:
Q  64 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||  || || |||||||||||||||||| ||||||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttat 24326114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 10383819 - 10383767
Alignment:
Q  213 aaaacggtctgacttattttatcttttgttataaaaacagcttatacataagc 265  Q
    ||||| || ||| |||||||||| ||| |||||||||||||||||||||||||    
T  10383819 aaaacagtttgatttattttatcatttattataaaaacagcttatacataagc 10383767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 14926903 - 14926967
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    ||||||||  ||||||||| ||||| ||||  || || |||||||||||||||||||||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 30277261 - 30277313
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagctta 200  Q
    ||||||||||| |||||||||| |||||||| |||||||| ||||| ||||||    
T  30277261 tgttttcagcttatttccataaactctctaggatagcttatgaaaacagctta 30277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 7918713 - 7918768
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||| | ||||||||||| || || |||||||||||||||||| ||||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttat 7918768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 11415293 - 11415141
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaa 160  Q
    |||||||| |||||| |||||||| ||  |||||||||| ||||| |||||| ||||  |||  ||||| | ||||| | | ||| || || |||||| |    
T  11415293 cttatttgtgcttatttactaacataagtacttgtgagattgttttagagagtttatggaaa--cagcttataacatgtccataagctattctcagctta 11415196  T
Q  161 tttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaa 215  Q
    ||| || || |||||||| |||||||| ||||| ||| || | ||||||||||||    
T  11415195 ttttcacaaactctctaggatagcttatgaaaacagcgtataacttatataaaaa 11415141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 26215472 - 26215433
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  26215472 ttattttatcttttgttatagaaatagcttatacataagc 26215433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 8062383 - 8062317
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaa 214  Q
    ||||||||||| |||||||||| |||||||  |||||||| ||||| |||||| | |||||| ||||    
T  8062383 tgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagcttatacaaaa 8062317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 8629261 - 8629199
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 114  Q
    ||||||| |||||||| |||||| |||||  || || |||||||||||||| |||||||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtgagactgcttgagagagct 8629199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 10062062 - 10062128
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| |||||||||||||||||||||||||  | |||||  || ||| |||| ||||||||||    
T  10062062 tttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagcttat 10062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 10114468 - 10114426
Alignment:
Q  224 acttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||    
T  10114468 acttattttatcttttgctatagaaatagcttatacataagca 10114426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 42597377 - 42597339
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataag 264  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  42597377 ttattttatcttttgttatagaaatagcttatacataag 42597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 44236739 - 44236797
Alignment:
Q  46 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 104  Q
    |||| ||||||||| |||||||||| |||||||||  || || ||||||||||||||||    
T  44236739 gcctgtttggattaccttatttgagtttatctactggcataagcacttgtgagactgtt 44236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 1112830 - 1112789
Alignment:
Q  225 cttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  1112830 cttattttatcttttgttatagaaatagcatatacataagca 1112789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 9130240 - 9130269
Alignment:
Q  51 tttggattagcttatttgagcttatctact 80  Q
    ||||||||||||||||||||||||||||||    
T  9130240 tttggattagcttatttgagcttatctact 9130269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 21130748 - 21130695
Alignment:
Q  64 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||| | || ||| ||  ||||||||||||||||||||||||||||    
T  21130748 atttgagcttatgtgctgacataaatacttgtgagactgtttgagagagcttat 21130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 43717849 - 43717882
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatcta 78  Q
    |||||||||||||| |||||||||||||||||||    
T  43717849 ggcctatttggattggcttatttgagcttatcta 43717882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 2606198 - 2606138
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    ||||||||  |||||| ||||||||||||| ||| ||||||| |||| |||||||| ||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatcactagtgaaactgtttgggaga 2606138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 6950294 - 6950266
Alignment:
Q  230 tttatcttttgttataaaaacagcttata 258  Q
    |||||||||||||||||||||||||||||    
T  6950294 tttatcttttgttataaaaacagcttata 6950266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 10075468 - 10075540
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| ||| ||||| |||||||||| |||||||||  || ||  ||||| |||||||||| |||||||||||    
T  10075468 ggcctgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttat 10075540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 10075574 - 10075634
Alignment:
Q  155 agctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaa 215  Q
    |||| |||| ||||| |||||||| |||||||| ||||| |||||| | ||||||||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaa 10075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 14482178 - 14482138
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  14482178 ttattttatcttttgttatagaaatagtttatacataagca 14482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 18331863 - 18331815
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgaga 99  Q
    ||||||||  ||||||||| |||||||||||||| || |||||||||||    
T  18331863 tttggattgacttatttgatcttatctactaacataagcacttgtgaga 18331815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 30191056 - 30191128
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| |||| || |||||||||||| ||||||| |  || || ||||||| |||||||||| ||||||||||    
T  30191056 ggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttat 30191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31884872 - 31884916
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||||||||||||||| || || ||||||||||| ||||||    
T  31884872 ttatttgagcttatctactagcataagcacttgtgagagtgtttg 31884916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 43393625 - 43393661
Alignment:
Q  43 aaggcctatttggattagcttatttgagcttatctac 79  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  43393625 aaggcctatttcgattggcttatttgagcttatctac 43393661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 148 - 268
Target Start/End: Complemental strand, 16889789 - 16889669
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgacttat-tttatcttttgttataa 246  Q
    ||||||||| | |||||||||| |||||||| |||||||| ||||| |||||| | ||| |||||||| | || |||||||  |||||||||||||||      
T  16889789 tgttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaa-cagtttgacttaagtttatcttttgttatgg 16889691  T
Q  247 aaacagcttatacataagcaat 268  Q
    ||| ||||||||||||||||||    
T  16889690 aaatagcttatacataagcaat 16889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 25720338 - 25720405
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||| ||||||||||||||| |||||||||  || || ||||||||||||||| ||||||||||||||    
T  25720338 tttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttata 25720405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 10771806 - 10771868
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 110  Q
    ||||||||||| |||||||||||||||||||||  || || ||||||||||| ||||||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgagattgtttgagag 10771868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 7550433 - 7550505
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| ||| |||| | ||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||||    
T  7550433 ggcctgttttgattggtttatttgagcttatccactgacataattacttgtgagactctttgagagagcttat 7550505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 8090075 - 8090019
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||||||||||||||| |||| | |||||| |||||||||||||||    
T  8090075 cttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttat 8090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 10391333 - 10391289
Alignment:
Q  222 tgacttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  10391333 tgacttattttatcttttgttataaaaatagcttatacgtaagca 10391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 34975498 - 34975450
Alignment:
Q  66 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 114  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  34975498 ttgagcttatctactaacataatcacttatgagactgtttgaaagagct 34975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 11615572 - 11615619
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgt 95  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||    
T  11615572 ctatttggattggcttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 40335786 - 40335849
Alignment:
Q  43 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||||| ||||||||  |||||||||| |||||||||  ||||| ||||||||||||||||||    
T  40335786 aaggcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 4855834 - 4855777
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||||||||| || | ||  || ||||||||||||||||||||||||||||||    
T  4855834 cttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttata 4855777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 39257315 - 39257380
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    |||||| | |||||||| |||||||||||||||| || ||||||||||||||| || || ||||||    
T  39257315 tttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagctta 39257380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 7096221 - 7096261
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  7096221 ttattttatcttttgttatagaaatagcttatacataagca 7096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 12407661 - 12407717
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| |||||||| | ||| || |||||||||||| ||||||||||||||||    
T  12407661 cttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttat 12407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 13224405 - 13224365
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  13224405 ttattttatcttttgttatagaaatagcttatacataagca 13224365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 14295561 - 14295454
Alignment:
Q  147 ctgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttata 245  Q
    |||||||||||| | ||| | || ||||| || |||||||||||||| |||||| | |||||||  ||||| || |||| ||||||||||||||||||||    
T  14295561 ctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatat-gaaaacagtttgactttattttatcttttgttata 14295463  T
Q  246 aaaacagct 254  Q
     ||| ||||    
T  14295462 gaaatagct 14295454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 18704052 - 18704167
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgacttattttatcttttgttataaa 247  Q
    ||||||||||| ||||||||||  ||| |  ||||||||| ||||| | |||| | ||||||||||||  | | ||||||  |||||||||||||||| |    
T  18704052 tgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttatataaaaatagct-tgactttatttatcttttgttataga 18704150  T
Q  248 aacagcttatacataag 264  Q
    || | ||||||||||||    
T  18704151 aataacttatacataag 18704167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 36638799 - 36638687
Alignment:
Q  150 ttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaac-ggtctgacttattttatcttttgttataaaa 248  Q
    ||||||||| |||||||||| |||||||| ||| |||| ||||| |||||    ||||||| |||||| ||||  | || ||||||||||||||||| ||    
T  36638799 ttttcagcttatttccataagctctctaggataacttatgaaaacagctttaggcttatatgaaaaacaggtcgaatttgttttatcttttgttatagaa 36638700  T
Q  249 acagcttatacat 261  Q
    | || ||||||||    
T  36638699 atagtttatacat 36638687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 37611147 - 37611276
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaat 161  Q
    |||||||| ||||||||||  |||||  |||||||||| ||||||||||||||  ||| |||||| ||    |||| ||| ||| |||||||||| | ||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagct--tatgaaaacaacttgtgacatgttcataagctgttttcaggttat 37611244  T
Q  162 ttccataacctctctagaatagcttacgaaaa 193  Q
    |||||||| ||||| |  |||||||| |||||    
T  37611245 ttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 37787877 - 37788006
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaat 161  Q
    |||||||| ||||||||||  |||||  |||||||||| ||||||||||||||  ||| |||||| ||    |||| ||| ||| |||||||||| | ||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagct--tatgaaaacaacttgtgacatgttcataagctgttttcaggttat 37787974  T
Q  162 ttccataacctctctagaatagcttacgaaaa 193  Q
    |||||||| ||||| |  |||||||| |||||    
T  37787975 ttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 40048374 - 40048414
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  40048374 ttattttatcttttgttatagaaacaacttatacataagca 40048414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 12460092 - 12460131
Alignment:
Q  224 acttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  12460092 acttattttatcttttgttatagaaatagcttatacataa 12460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 19113211 - 19113254
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaatt 269  Q
    ||||||||| |||||||||||||| || ||||||||||||||||    
T  19113211 ttattttattttttgttataaaaatagtttatacataagcaatt 19113254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 42034216 - 42034153
Alignment:
Q  44 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 107  Q
    |||||| |||||||||||||||||||||||| ||||| ||| || ||||| ||  |||||||||    
T  42034216 aggcctgtttggattagcttatttgagcttacctactgacataagcacttatgcaactgtttga 42034153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 25705570 - 25705628
Alignment:
Q  41 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 99  Q
    |||| |||| |||||||||  |||||||| |||||||||||||| || |||||||||||    
T  25705570 ttaaagcctgtttggattaaattatttgaacttatctactaacataagcacttgtgaga 25705628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 12407755 - 12407792
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12407755 ttattttatcttttgttatagaaatagcttatacataa 12407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 14980648 - 14980591
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||||||||||||||  || || ||||   |||||||||||||||||||||||    
T  14980648 cttatttgagcttatctactggcataagcactatagagactgtttgagagagcttata 14980591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 17259351 - 17259302
Alignment:
Q  66 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    ||||||||||||||||||| || |||||||||||||  ||||| ||||||    
T  17259351 ttgagcttatctactaacataagcacttgtgagacttgttgagtgagctt 17259302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 31723958 - 31723889
Alignment:
Q  47 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||||||||||  ||||||||||||||| ||||| || || ||||| ||||||| ||||  ||||||||    
T  31723958 cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatttgtaagagctta 31723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 1084070 - 1084126
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||| |||| |||| ||| || ||||||||| |||||||||||||| ||||    
T  1084070 cttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttat 1084126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 1773521 - 1773557
Alignment:
Q  228 attttatcttttgttataaaaacagcttatacataag 264  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  1773521 attttatcttttgttatagaaatagcttatacataag 1773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 6938648 - 6938684
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctacta 81  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  6938648 ggcctgtttggattaggttatttgagcttatctacta 6938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 7674800 - 7674768
Alignment:
Q  47 cctatttggattagcttatttgagcttatctac 79  Q
    |||||||||||| ||||||||||||||||||||    
T  7674800 cctatttggattggcttatttgagcttatctac 7674768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 11615484 - 11615452
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttata 258  Q
    |||||||||||||||||||||||| ||||||||    
T  11615484 ttattttatcttttgttataaaaatagcttata 11615452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 13781812 - 13781860
Alignment:
Q  67 tgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    |||||||||||||||||| ||  |||||||||||||||||  |||||||    
T  13781812 tgagcttatctactaacataagtacttgtgagactgtttggtagagctt 13781860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 14599287 - 14599359
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| ||||||||   |||||||| ||||| ||||| || || ||||||| ||| |||||||||||||||||    
T  14599287 ggcctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttat 14599359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 14706201 - 14706253
Alignment:
Q  47 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 99  Q
    ||||||||||||  |||||||||||||| ||||| ||| || |||||||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 20982229 - 20982269
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||| ||||||||| ||| ||||||||||||||||    
T  20982229 ttattttatcctttgttatagaaatagcttatacataagca 20982269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 21782587 - 21782643
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||  |||||||||  || || |||||||||| ||||||||||||||||||    
T  21782587 cttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttat 21782643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 26516274 - 26516234
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| || ||| ||||||||||||||||    
T  26516274 ttattttatcttttgttttagaaatagcttatacataagca 26516234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 29588856 - 29588816
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  29588856 ttattttatattttgttatagaaatagcttatacataagca 29588816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 32849317 - 32849261
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| |||| |||||    
T  32849317 cttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttat 32849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 37063168 - 37063208
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  37063168 ttattttatcttttgttatagaaatagtttatacataagca 37063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 37588375 - 37588443
Alignment:
Q  147 ctgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaa 215  Q
    |||||||||||| |||||||||| ||||| |||||| |||| ||||| | |||| | ||||||| ||||    
T  37588375 ctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaa 37588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 37969012 - 37968960
Alignment:
Q  65 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||| ||| ||  |||||||| ||||||||||||| |||||    
T  37969012 tttgagcttatctactgacataagtacttgtgaaactgtttgagagatcttat 37968960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 39128615 - 39128575
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||  ||||||||||||||||    
T  39128615 ttattttatcttttgttatagaattagcttatacataagca 39128575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 2996731 - 2996656
Alignment:
Q  42 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||| ||||||||||||||| ||||| || | ||| || ||||| |||||||||||||||||||||||    
T  2996731 taaggcctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttat 2996656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 27123268 - 27123339
Alignment:
Q  46 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 27123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 18628486 - 18628540
Alignment:
Q  63 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttat 18628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 8074871 - 8074750
Alignment:
Q  92 ttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttacgaa 191  Q
    ||||||||||||||||||||||||||| |||  ||||| |  | || | ||||| || |||||| |||| |||||||| |||||||  |||||||| |||    
T  8074871 ttgtgagactgtttgagagagcttatagaaa--cagctaatgaaatgtccgtaatctcttttcatctaacttccataagctctctaagatagcttaggaa 8074774  T
Q  192 aaaagcttacaccttatataaaaa 215  Q
    |  | |||||| ||||||||||||    
T  8074773 agcaacttacagcttatataaaaa 8074750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 4691986 - 4691939
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 109  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||    
T  4691986 ttatttgagcttatctactgtcacaatcacttgtgagactatttgaga 4691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 19429391 - 19429457
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| |||||||||||||||| ||||   | || |||||||||||||||||| ||||||||||    
T  19429391 tttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 30207530 - 30207704
Alignment:
Q  89 cacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagcttac 188  Q
    |||||||||||||| | |||||||||||||  | ||||||  |  |||| |  |||| |||||||||||| |||||||||| |||||||   |||||||     
T  30207530 cacttgtgagactgatcgagagagcttata--agaacagcatatgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttat 30207627  T
Q  189 gaaaaaagcttacaccttatataaaaaacggtctgacttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||| | |||| | |||||||  ||||| || ||| ||||||||| |||||||||| ||  | | ||||||||||||    
T  30207628 gaaaacaacttatagcttatat-gaaaacagtttgatttattttattttttgttatagaactaacatatacataagca 30207704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 25896935 - 25896866
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||||  |||||||||| |||||||||| ||  | |||||||||||||||||  |||||||||||    
T  25896935 tatttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttata 25896866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 46860066 - 46860001
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||  ||||||||| |||||||| | ||| || ||||||||| |||||||||||||||||||    
T  46860066 ttggattgacttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttat 46860001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 50745976 - 50745928
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaatttatcat 275  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  50745976 ttattttatcttttgttataaaaatagcttagacataagc-atttatcat 50745928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 1312924 - 1312860
Alignment:
Q  375 cgaaaacaagttataacatatccatatactgtttccagctcatttccataaagtctccaaaatag 439  Q
    ||||||||| |||| |||||| |||| ||||||| ||||| ||||||||||| ||||||| ||||    
T  1312924 cgaaaacaacttattacatattcataaactgttttcagcttatttccataaactctccaagatag 1312860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 5131326 - 5131370
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaattt 270  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||    
T  5131326 ttattttatcttttgttatataaacaacttatacataagaaattt 5131370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 8422931 - 8422971
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  8422931 ttattttatctttttttataaaaatagcttatacataagca 8422971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 18512440 - 18512500
Alignment:
Q  55 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    ||||| |||||||||||||||||||| ||| || |||||||||||||  |||| |||||||    
T  18512440 gattaacttatttgagcttatctactgacataaacacttgtgagactagttgaaagagctt 18512500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 51555961 - 51556001
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  51555961 ttattttatcttttgttataataatagcttatacataagca 51556001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 4072016 - 4071961
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||| ||| ||| | || |||||||||||||||||||||||||||||    
T  4072016 ttatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttat 4071961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 17822776 - 17822815
Alignment:
Q  41 ttaaggcctatttggattagcttatttgagcttatctact 80  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  17822776 ttaaggcctgtttggattaacttatttgagcttatctact 17822815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 21157915 - 21157852
Alignment:
Q  53 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    |||||| ||||||||||||| ||||||| ||| || ||||||| ||||||||||  ||||||||    
T  21157915 tggatttgcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagctta 21157852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 40709475 - 40709514
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  40709475 tattttatcttttgttatagaaacagcttataaataagca 40709514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 43824337 - 43824270
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaa 215  Q
    ||||||||||| |||||||||| || || || ||| ||||||||||||||||| | ||||||| ||||    
T  43824337 tgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatgaaaa 43824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 1017176 - 1017122
Alignment:
Q  52 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||  |||||||||||| ||||||| ||| || ||||||||||||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 6364125 - 6364087
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataag 264  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  6364125 ttattttatcttttgttatagaaatagcttatacataag 6364087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 17125724 - 17125766
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaat 268  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||    
T  17125724 ttattttatattttgttataaaaatagcttatacataaacaat 17125766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 17975249 - 17975323
Alignment:
Q  42 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  17975249 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 17975323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 22845623 - 22845657
Alignment:
Q  47 cctatttggattagcttatttgagcttatctacta 81  Q
    |||||||||||| ||||||||||||||||||||||    
T  22845623 cctatttggattggcttatttgagcttatctacta 22845657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 47970292 - 47970254
Alignment:
Q  228 attttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  47970292 attttatcttttgttatagaaatagcttatacataagca 47970254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 56186819 - 56186869
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    ||||||||| |||||| ||| ||||||||||||| || |||||||||||||    
T  56186819 tttggattaacttattcgagtttatctactaacataaacacttgtgagact 56186869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 2977897 - 2977962
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||||||| |||||||||||| ||||| |  || || ||| ||||||||||||| ||||||||||    
T  2977897 tttggattaacttatttgagctgatctagtggcataagcacgtgtgagactgtttaagagagctta 2977962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 4191712 - 4191675
Alignment:
Q  229 ttttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagca 4191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 19394864 - 19394897
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatcta 78  Q
    |||||||||||||| |||||||||||||||||||    
T  19394864 ggcctatttggattggcttatttgagcttatcta 19394897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 32420976 - 32421029
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    |||||||||||  |||||||||||||| |||||| || || |||||||||||||    
T  32420976 ctatttggattgacttatttgagcttacctactagcataagcacttgtgagact 32421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 44138535 - 44138494
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaa 267  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  44138535 ttattttatcttctgctatagaaacagcttatacataagcaa 44138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 45104307 - 45104344
Alignment:
Q  41 ttaaggcctatttggattagcttatttgagcttatcta 78  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  45104307 ttaaggcctgtttggattagcttatttgagcatatcta 45104344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 51044553 - 51044590
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  51044553 ttattttatcttttgttatagaaatagcttatacataa 51044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 56007814 - 56007765
Alignment:
Q  65 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 114  Q
    ||||| ||||||||||  || |||||||||| ||||||||||||||||||    
T  56007814 tttgaacttatctactggcataatcacttgtaagactgtttgagagagct 56007765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 4471147 - 4471107
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||||| || |||| ||||||||    
T  4471147 ttattttatcttttgttataaaaatagtttatgcataagca 4471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 4798653 - 4798693
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  4798653 ttattttatcttttgatatagaaatagcttatacataagca 4798693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 25487639 - 25487679
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  25487639 ttattttattttttgttatagaaatagcttatacataagca 25487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 28623265 - 28623225
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  28623265 ttattttatcttttgttatataaataacttatacataagca 28623225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 32066503 - 32066543
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  32066503 ttattttatcttttgttataaaagtagtttatacataagca 32066543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 33534100 - 33534156
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||| | ||| ||  |||||||||| | |||||||||||||||    
T  33534100 cttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttat 33534156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 50298653 - 50298609
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||    
T  50298653 ttattttagcttatctactgacataagcacttgtgagactgtttg 50298609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 28803439 - 28803511
Alignment:
Q  39 atttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    ||||||||||||||||||||  |||||||||||||||||||   || || ||| |||||||||||||||||||    
T  28803439 atttaaggcctatttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagaga 28803511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 11514045 - 11513979
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| | ||||||||| |||||||||| || || ||||||||||||||||| |||||||||||    
T  11514045 tttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttat 11513979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 10143211 - 10143108
Alignment:
Q  163 tccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgactta-ttttatcttttgttataaaaacagcttatacat 261  Q
    ||||||| ||||| |  |||||||| ||||||| |||| | |||||||||||| | || ||||||| ||||||||||||||||| ||| | |||||||||    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaa-cagtttgacttaattttatcttttgttatagaaataacttatacat 10143113  T
Q  262 aagca 266  Q
    |||||    
T  10143112 aagca 10143108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 41170759 - 41170704
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||||||| ||||    
T  41170759 tttggattggcttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 11063342 - 11063292
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    ||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  11063342 tttggattagcttatttgaacttatctactaacacaagcatttgcgagact 11063292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 22878247 - 22878181
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||  |||||||||||||||| ||| ||| || |||||||||||||||||| |||| |||||    
T  22878247 tttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttat 22878181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 37474921 - 37474848
Alignment:
Q  43 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||||||||  ||| ||||||| | ||| || ||||| ||||||| |||||||||||||||    
T  37474921 aaggcctatttggattagcttatccgagtttatcta-ttacataaacacttatgagactctttgagagagcttat 37474848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 43456628 - 43456743
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 150  Q
    ||||||||  ||||||||| ||||| |||| ||| || ||||||| ||||||||||| ||||||| |   |||||| ||||  |||| | | ||||||||    
T  43456628 tttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtg--aaaacaactcatgacatgtccataaactgt 43456725  T
Q  151 tttcagctaatttccata 168  Q
    |||||||| |||||||||    
T  43456726 tttcagcttatttccata 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 5045251 - 5045288
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5045251 ttattttatcttttgttataaaaatagcttatacataa 5045288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 5133748 - 5133707
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaa 267  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  5133748 ttattttatcttttgttatagaaatagcttatacataagcaa 5133707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 13867015 - 13866962
Alignment:
Q  63 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||| ||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 18962132 - 18962172
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  18962132 ttattttatcttttgttataaaaatagctaatacataagca 18962172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 5998796 - 5998839
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagcaatt 269  Q
    |||||||||||||||||||||||| |||||||| |||| |||||    
T  5998796 ttattttatcttttgttataaaaatagcttatatataaacaatt 5998839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 6548047 - 6547972
Alignment:
Q  42 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||| || ||||||||  ||||||  ||||||||||||| || ||  ||||||||||||||||||| ||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagcttat 6547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 15370236 - 15370299
Alignment:
Q  43 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||||| ||||||||  ||||||||||||||||||||  || || || |||||||||||||||    
T  15370236 aaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 32821785 - 32821746
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  32821785 ttattttatcttttgttataaaaatagcttattcataagc 32821746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 40944062 - 40944007
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||||||||||||||| ||||||| | ||| || ||||||||| ||||||||    
T  40944062 tttggattagcttatttgagtttatctaatgacataagcacttgtgaaactgtttg 40944007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 41817222 - 41817155
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaa 215  Q
    ||||||||||| |||||||||| ||||| || |||| ||| ||||| ||||||||| ||||| |||||    
T  41817222 tgttttcagcttatttccataagctctccaggatagtttatgaaaatagcttacacattatacaaaaa 41817155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 44443295 - 44443256
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  44443295 tattttatcttttgtaataaaaatagcttatacataagca 44443256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 3078520 - 3078594
Alignment:
Q  42 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 116  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  3078520 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 3078594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 4350839 - 4350773
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| |||||||||||||| |||||| ||| || |||||  |||| ||||||||||| |||||    
T  4350839 tttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttat 4350773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 25609936 - 25609894
Alignment:
Q  60 gcttatttgagcttatctactaacacaatcacttgtgagactg 102  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  25609936 gcttatttgagcttatctactaacataagaacttgtgagactg 25609894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33981270 - 33981220
Alignment:
Q  53 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgt 103  Q
    |||||||||||||||||||||| |||||| |  || |||||||||||||||    
T  33981270 tggattagcttatttgagcttacctactagcttaagcacttgtgagactgt 33981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 40158870 - 40158816
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 102  Q
    ||||||||||| |||||||||||| |||||||| ||| ||  |||||||||||||    
T  40158870 ctatttggattggcttatttgagcatatctactgacataagaacttgtgagactg 40158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 8820368 - 8820405
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataag 264  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  8820368 tattttatcttttgttatataaatagcttatacataag 8820405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 9996877 - 9996820
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||||||||||||||| |||| || ||  ||||||||||||| ||| |||||||||||    
T  9996877 cttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttata 9996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 30990360 - 30990393
Alignment:
Q  51 tttggattagcttatttgagcttatctactaaca 84  Q
    |||||||| |||||||||||||||||||||||||    
T  30990360 tttggattggcttatttgagcttatctactaaca 30990393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 32364642 - 32364719
Alignment:
Q  41 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||| ||||||||||||  ||||||||||  ||||||||| || || || |||||| | |||||| |||||||||||    
T  32364642 ttaagccctatttggattgacttatttgagaatatctactatcataagcatttgtgaaattgtttgggagagcttata 32364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 41033047 - 41033084
Alignment:
Q  229 ttttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  41033047 ttttatcttttgttatagaaatagcttatacataagca 41033084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 42852621 - 42852678
Alignment:
Q  49 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    |||||||||| |||||||||| ||||||| ||  || || ||||||||||||||||||    
T  42852621 tatttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttg 42852678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 44606182 - 44606219
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataa 263  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  44606182 ttattttatcttttgttatgaaaatagcttatacataa 44606219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 1647291 - 1647251
Alignment:
Q  147 ctgttttcagctaatttccataacctctctagaatagctta 187  Q
    |||||||||||| |||||||||| ||||||| |||||||||    
T  1647291 ctgttttcagcttatttccataagctctctataatagctta 1647251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 3102669 - 3102629
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||| ||||| |||||||| ||||||||||||||||    
T  3102669 ttattttatattttgctataaaaatagcttatacataagca 3102629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 4026793 - 4026753
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||| |||||||| |||||||| |||||||    
T  4026793 ttattttatcttttgctataaaaatagcttatagataagca 4026753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 5045084 - 5045148
Alignment:
Q  46 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 110  Q
    |||| |||| |||||| ||||||| ||||| |||| |||  | ||||||||||||||||||||||    
T  5045084 gcctgtttgaattagcgtatttgaacttatttactgacaacaacacttgtgagactgtttgagag 5045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 9478438 - 9478382
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    ||||||||| ||||||||| |||| ||  ||||||| ||||||||||||||| ||||    
T  9478438 cttatttgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttat 9478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 10190255 - 10190215
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||| ||||||||||||| || |||||||||||||    
T  10190255 ttattttatcctttgttataaaaatagtttatacataagca 10190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 23747278 - 23747242
Alignment:
Q  228 attttatcttttgttataaaaacagcttatacataag 264  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  23747278 attttatcttttgatataaaaatagcttatacataag 23747242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 25609772 - 25609732
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||| ||||| ||| ||||||||||||||||    
T  25609772 ttattttatcttttcttatagaaatagcttatacataagca 25609732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 28902053 - 28902013
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||| ||| ||||||||||| ||||||||||||||||    
T  28902053 ttattttaacttatgttataaaaatagcttatacataagca 28902013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 30990463 - 30990503
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||| ||||||||| ||| ||||||||||||||||    
T  30990463 ttattttatcatttgttatagaaagagcttatacataagca 30990503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 32098402 - 32098442
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  32098402 ttattttatcttttgttatagaaatagcttatatataagca 32098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 32694266 - 32694151
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctga-cttattttatcttttgttataa 246  Q
    ||||||||||| ||||||| || || ||||| |||||||| | ||| | |||| |  ||||||| ||||  ||||||  ||||||||||||||| ||||     
T  32694266 tgttttcagcttatttccacaatctatctaggatagcttatgcaaacaacttataaattatata-aaaatagtctgattttattttatcttttgatatag 32694168  T
Q  247 aaacagcttatacataa 263  Q
    ||| |||||||||||||    
T  32694167 aaatagcttatacataa 32694151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 34054995 - 34055035
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  34054995 ttattttatcttttgttatagaaatagcctatacataagca 34055035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 40759315 - 40759259
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    ||||| ||||||||  |||||||||||||||||| | ||| || |||||||||||||    
T  40759315 ggcctgtttggattgccttatttgagcttatctattgacataagcacttgtgagact 40759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 43142011 - 43141955
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||||||||| || || |||||| || |||||| || ||||||    
T  43142011 cttatttgagcttatctactaacataagcaattgtgaaacagtttgacagcgcttat 43141955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 2460067 - 2460138
Alignment:
Q  46 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 2460138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 35070388 - 35070448
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 111  Q
    ||||||||  |||||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  35070388 tttggattttcttatttgagcttatctactaacataagcacttgtgggactgtttgggaga 35070448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 33416360 - 33416321
Alignment:
Q  227 tattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  33416360 tattttatcttttgttataaaaatagcttatacataagca 33416321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 24973945 - 24974015
Alignment:
Q  48 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||||||||||||||||||||| ||||||| || ||| || ||||||| ||| ||||||  ||||||||||    
T  24973945 ctatttggattagcttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttata 24974015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 34538159 - 34538273
Alignment:
Q  71 cttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataac 170  Q
    |||||||||| | | || ||||||||||||| ||||||||| ||  ||||||||||||| || |||| | | |||||| ||||||||| ||||  | ||     
T  34538159 cttatctactcatataagcacttgtgagactatttgagagatct--tataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaa 34538256  T
Q  171 ctctctagaatagctta 187  Q
    |||||||| ||||||||    
T  34538257 ctctctaggatagctta 34538273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 8420129 - 8420185
Alignment:
Q  62 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    ||||||||||||||||| | ||| || |||||||||||||||| | |||||||||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttata 8420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 12111122 - 12111066
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    ||||||||||||||  ||||||||||||||||||||| || || |||||| ||||||    
T  12111122 ggcctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 20370875 - 20370839
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacata 262  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20370875 ttattttatcttttgttataaaaatagcttatacata 20370839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 33259788 - 33259752
Alignment:
Q  230 tttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||||||||||||||||    
T  33259788 tttatcttttgttataaaaatagcttatacataagca 33259752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 281864 - 281974
Alignment:
Q  148 tgttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttataa 246  Q
    ||||||||||| |||||||| | |||||||| |||||||| ||| | |||||| | ||||||| ||||   || |||| ||||||||||||||||||||     
T  281864 tgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagt-tgactttattttatcttttgttatag 281962  T
Q  247 aaacagcttata 258  Q
     || ||||||||    
T  281963 gaatagcttata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 1432288 - 1432221
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 118  Q
    |||||||| | |||||| |||||||||||| ||| || || |||| |||||||||||||||| |||||    
T  1432288 tttggattggtttattttagcttatctactcacataagcaattgttagactgtttgagagagtttata 1432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 9667916 - 9667955
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagac 100  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  9667916 cttatttgagcttatctcctaacacaagcacttgtgagac 9667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 27894182 - 27894116
Alignment:
Q  51 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||| ||||||||||| ||||  ||| ||  ||||||||||||||||||  ||||||||    
T  27894182 tttggattagctcatttgagcttacctacggacataagtacttgtgagactgtttgaacgagcttat 27894116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 2457096 - 2457035
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 106  Q
    ||||| |||||||| ||||||||||| ||||||||  ||| || ||||||| ||||||||||    
T  2457096 ggcctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgtttg 2457035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 3171527 - 3171564
Alignment:
Q  228 attttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  3171527 attttatcttttgttataaaaatagcttatgcataagc 3171564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 4006766 - 4006650
Alignment:
Q  150 ttttcagctaatttccataacctctctagaatagcttacgaaaaaagcttacaccttatataaaaaacggtctgac-ttattttatcttttgttataaaa 248  Q
    ||||||||| |||| |||||||||||  | |||||||| ||||| | |||| | |||||||| |||||  | |||| |||||||||| ||||||||| ||    
T  4006766 ttttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatata-aaaacaatttgactttattttatcatttgttatagaa 4006668  T
Q  249 acagcttatacataagca 266  Q
    | | ||||| ||||||||    
T  4006667 atatcttatgcataagca 4006650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 4247731 - 4247768
Alignment:
Q  229 ttttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagca 4247768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 10353705 - 10353746
Alignment:
Q  74 atctactaacacaatcacttgtgagactgtttgagagagctt 115  Q
    ||||||||||| || |||||||||||||||||| ||||||||    
T  10353705 atctactaacataagcacttgtgagactgtttgggagagctt 10353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 29957940 - 29957977
Alignment:
Q  150 ttttcagctaatttccataacctctctagaatagctta 187  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  29957940 ttttcagcttatttccataagctctctagaatagctta 29957977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 31461651 - 31461614
Alignment:
Q  229 ttttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  31461651 ttttatcttttgttatagaaatagcttatacataagca 31461614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 31624236 - 31624195
Alignment:
Q  224 acttattttatcttttgttataaaaacagcttatacataagc 265  Q
    |||||||||||||||||||||| ||| |||||||||| ||||    
T  31624236 acttattttatcttttgttatagaaatagcttatacacaagc 31624195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 32171297 - 32171370
Alignment:
Q  44 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||| ||||||||  ||||||| ||||||  || | ||| || |||||| ||||||||||||||||||||||    
T  32171297 aggcctgtttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttat 32171370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 2034533 - 2034572
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  2034533 ttattttatcttt-gttgtaaaaacagcttatacataagca 2034572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 2514678 - 2514638
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||| ||||| ||| ||||||||||||||||    
T  2514678 ttattttatcttttattatagaaatagcttatacataagca 2514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 2727954 - 2727990
Alignment:
Q  230 tttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||| || |||||||||||||||||    
T  2727954 tttatcttttgttatagaagcagcttatacataagca 2727990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 3155311 - 3155255
Alignment:
Q  64 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatata 120  Q
    ||||||||||||||||  ||| ||||||||| |||||  ||||| ||||||||||||    
T  3155311 atttgagcttatctacagacataatcacttgagagaccatttgaaagagcttatata 3155255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 3738240 - 3738196
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgttt 105  Q
    |||||||||| |||||||||| || || |||||||||||||||||    
T  3738240 cttatttgagtttatctactagcataagcacttgtgagactgttt 3738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 6742950 - 6742910
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagact 101  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  6742950 cttatttgagcttacctactagcataatcacttgtgagact 6742910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 10452454 - 10452494
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||| |||||||||| ||| ||||||||||||||||    
T  10452454 ttattttatattttgttatagaaatagcttatacataagca 10452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 12811419 - 12811391
Alignment:
Q  45 ggcctatttggattagcttatttgagctt 73  Q
    |||||||||||||||||||||||||||||    
T  12811419 ggcctatttggattagcttatttgagctt 12811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 28621204 - 28621244
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||||||||||  |||||| ||||||    
T  28621204 ttattttatcttttgttataaaaacaatttatacctaagca 28621244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 29274323 - 29274363
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||| |||| ||| ||||||||||||||||    
T  29274323 ttattttatcttttgctatagaaatagcttatacataagca 29274363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 29940772 - 29940732
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||| ||||||    
T  29940772 ttattttatcttttgttatagaaaaagcttatacttaagca 29940732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 30865622 - 30865566
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||||||||||  ||||| || ||||||| |||| |||| |||||||||||    
T  30865622 cttatttgagcttatctgttaacataaacacttgttagacagtttaagagagcttat 30865566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 32917336 - 32917280
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||| ||||||| ||||||  | || |||||||||||||||||| ||||||||||    
T  32917336 cttattagagcttacctactagaataaacacttgtgagactgtttgggagagcttat 32917280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 32997627 - 32997591
Alignment:
Q  89 cacttgtgagactgtttgagagagcttatataaaaac 125  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32997627 cacttgtgagaccgtttgagagagcttataaaaaaac 32997591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 33068655 - 33068695
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  33068655 ttattttatcttttgttatagaaataacttatacataagca 33068695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 6949 - 6893
Alignment:
Q  61 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 35895 - 35930
Alignment:
Q  231 ttatcttttgttataaaaacagcttatacataagca 266  Q
    ||||||||||||||||||||||||||||||||||||    
T  35895 ttatcttttgttataaaaacagcttatacataagca 35930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 35775 - 35819
Alignment:
Q  73 tatctactaacacaatcacttgtgagactgtttgagagagcttat 117  Q
    |||||||| ||| ||||||| || |||||||||||||||||||||    
T  35775 tatctactgacataatcactcgttagactgtttgagagagcttat 35819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 58903 - 58865
Alignment:
Q  39 atttaaggcctatttggattagcttatttgagcttatct 77  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  58903 atttagggcctatttggattagcttatttgagcttatct 58865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 9692 - 9761
Alignment:
Q  44 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 113  Q
    |||||||||| ||||   ||||||||| ||||||||||||| ||  ||||||||||||||||| ||||||    
T  9692 aggcctatttagattgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagc 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 1168 - 1208
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  1168 ttattttatcttttgttatagaaatagcttatacataagca 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 2807 - 2767
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  2807 ttattttatcttttgttatagaaatagcttatacataagca 2767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 159888 - 159940
Alignment:
Q  45 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtga 97  Q
    ||||| |||||||| ||||||||||||||||||||||| | || |||||||||    
T  159888 ggcctgtttggattggcttatttgagcttatctactaatataaacacttgtga 159940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 3876 - 3840
Alignment:
Q  230 tttatcttttgttataaaaacagcttatacataagca 266  Q
    |||||||||||||||||||| |||||| |||||||||    
T  3876 tttatcttttgttataaaaatagcttacacataagca 3840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 63379 - 63411
Alignment:
Q  226 ttattttatcttttgttataaaaacagcttata 258  Q
    |||||||||||||||||||||||| ||||||||    
T  63379 ttattttatcttttgttataaaaatagcttata 63411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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