View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4076_low_3 (Length: 507)
Name: NF4076_low_3
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4076_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 43 - 491
Target Start/End: Complemental strand, 53491671 - 53491223
Alignment:
| Q |
43 |
aggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgct |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491671 |
aggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgct |
53491572 |
T |
|
| Q |
143 |
acctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaat |
242 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491571 |
acctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaat |
53491472 |
T |
|
| Q |
243 |
atgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctcta |
342 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491471 |
atgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctcta |
53491372 |
T |
|
| Q |
343 |
aggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactg |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491371 |
aggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactg |
53491272 |
T |
|
| Q |
443 |
tttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491271 |
tttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 48 - 491
Target Start/End: Complemental strand, 53499259 - 53498819
Alignment:
| Q |
48 |
tcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctc |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53499259 |
tccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctc |
53499160 |
T |
|
| Q |
148 |
ctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgtt |
247 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53499159 |
ctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgct |
53499060 |
T |
|
| Q |
248 |
gtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggat |
347 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||| |||||||||||||| |
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|
| T |
53499059 |
gtgtgaagca-aaaatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggat |
53498961 |
T |
|
| Q |
348 |
tgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttat |
447 |
Q |
| |
|
||||||| |||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||| |
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| T |
53498960 |
tgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtat |
53498863 |
T |
|
| Q |
448 |
gttcaatgagataccaaataaatcacttcaatttttcacaggtt |
491 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
53498862 |
gttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 90 - 436
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
90 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
189 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
190 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
289 |
Q |
| |
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||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
290 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
389 |
Q |
| |
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||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
390 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
436 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
312 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
350 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 82 - 383
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
82 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
181 |
Q |
| |
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|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
|
| Q |
182 |
agtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattc |
281 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | |
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|
| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgc |
45355338 |
T |
|
| Q |
282 |
tagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcag |
381 |
Q |
| |
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||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
45355339 |
cagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcag |
45355438 |
T |
|
| Q |
382 |
gt |
383 |
Q |
| |
|
|| |
|
|
| T |
45355439 |
gt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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