View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4076_low_4 (Length: 473)

Name: NF4076_low_4
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4076_low_4
NF4076_low_4
[»] chr6 (20 HSPs)
chr6 (213-410)||(4571984-4572181)
chr6 (20-192)||(4557981-4558153)
chr6 (209-416)||(4558139-4558346)
chr6 (245-459)||(4517390-4517604)
chr6 (209-377)||(4586646-4586814)
chr6 (20-158)||(4612856-4612994)
chr6 (20-158)||(4586492-4586632)
chr6 (221-379)||(4612668-4612830)
chr6 (214-459)||(4581029-4581278)
chr6 (20-158)||(4571828-4571966)
chr6 (247-377)||(4599216-4599346)
chr6 (386-459)||(4569264-4569338)
chr6 (22-102)||(4299015-4299095)
chr6 (20-95)||(4599026-4599101)
chr6 (20-98)||(4514319-4514397)
chr6 (23-96)||(4626810-4626883)
chr6 (38-98)||(4517195-4517255)
chr6 (37-95)||(4580914-4580972)
chr6 (23-104)||(4593093-4593174)
chr6 (38-98)||(4506731-4506791)
[»] chr8 (2 HSPs)
chr8 (209-416)||(16685201-16685408)
chr8 (20-192)||(16685394-16685562)
[»] scaffold0477 (1 HSPs)
scaffold0477 (23-90)||(3895-3962)
[»] chr3 (1 HSPs)
chr3 (313-377)||(1282560-1282624)
[»] scaffold0288 (1 HSPs)
scaffold0288 (20-102)||(2912-2994)
[»] chr7 (1 HSPs)
chr7 (20-48)||(3087276-3087304)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 213 - 410
Target Start/End: Original strand, 4571984 - 4572181
Alignment:
Q  213 tctacatatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaatgta 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4571984 tctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagaaatgtacgtaaatgaataccagtcagaaatgta 4572083  T
Q  313 catgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  | |||||||||||||| |||||||||    
T  4572084 catgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgctaatatcagaaactatgcaactaac 4572181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 4557981 - 4558153
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtcaaatttttaaaagttgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||    
T  4557981 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaatttataaaagttgtt 4558080  T
Q  120 agcttgaaataaaatctccatactcctaatatatgtcatttgattttgaacactttaactattctacatatat 192  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4558081 agctggaaataaaatctccatactcctaatacatgtcatttgattttgaacactttaactattctacatatat 4558153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 209 - 416
Target Start/End: Original strand, 4558139 - 4558346
Alignment:
Q  209 ctattctacatatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaa 308  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||  ||||| |||    
T  4558139 ctattctacatatatgaagaaagcaagaagattaattgttaccttttagtggtatgagacctttatccaacaatgtactaaaatgaataaaagtcaaaaa 4558238  T
Q  309 tgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta 408  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||| ||||||| ||  |||||||||||||||| |||| ||    
T  4558239 tgtacatgcattggatggactaaagaaaacagaagggattgaaagttcttcagaagcttgtatggtaaaagacatgccaatatcagaaactatgcaagta 4558338  T
Q  409 acaggagg 416  Q
    || |||||    
T  4558339 actggagg 4558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 245 - 459
Target Start/End: Original strand, 4517390 - 4517604
Alignment:
Q  245 tgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagg 344  Q
    |||||||||| |||||||||| ||||||||| | ||||||||| || || | | | | ||||| || ||||||| | | || |||||| | |||| ||||    
T  4517390 tgttacctttgagtggtatgacacctttatcaatcaatgtacgaaagtgcaaagccgacagaagtgaacatgcactagctgaactaaatagaacactagg 4517489  T
Q  345 gattgaaagttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatcttta 444  Q
     |    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517490 taaaccatgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatcttta 4517589  T
Q  445 agtctagcaagaagt 459  Q
    |||||||||||||||    
T  4517590 agtctagcaagaagt 4517604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 209 - 377
Target Start/End: Original strand, 4586646 - 4586814
Alignment:
Q  209 ctattctacatatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||  |||||||||| ||||| |||    
T  4586646 ctattctacatatatgaagaaagaaagaagattaattgttaccctttagtggtatgagacctttatccaacaatgtactaaaatgaatacaagtcaaaaa 4586745  T
Q  309 tgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaa 377  Q
      |||||||| ||| |||| |||||| ||||   |||| ||||||||||||||||||||||||||||||    
T  4586746 catacatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtatagtaaa 4586814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 4612994 - 4612856
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtcaaatttttaaaagttgtt 119  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||    
T  4612994 agtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaatttacaaaagttgtt 4612895  T
Q  120 agcttgaaataaaatctccatactcctaatatatgtcat 158  Q
    |||||||||||||||||||| | |||||||| |||||||    
T  4612894 agcttgaaataaaatctccagattcctaatacatgtcat 4612856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 4586492 - 4586632
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgc--atgtcaaatttttaaaagttg 117  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||  || |||||||| |||||||||    
T  4586492 agtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatatatcaaatttataaaagttg 4586591  T
Q  118 ttagcttgaaataaaatctccatactcctaatatatgtcat 158  Q
    ||||||||||||  ||||| |||||||| ||||||||||||    
T  4586592 ttagcttgaaattgaatcttcatactccaaatatatgtcat 4586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 4612830 - 4612668
Alignment:
Q  221 tatgaagaaagaaagaagattaattg----ttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaatgtacatg 316  Q
    ||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||| | ||||||| |||| |||| |||||||  |||||||||||    
T  4612830 tatgaagaaagaaagaagattaaatgatcgttaccttttagtggtatgacacctttatcaaacaatgtaagtaagtgaaaaccagtccaaaatgtacatg 4612731  T
Q  317 cattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaag 379  Q
    |||||| ||||||||||| ||||  ||||||||||||||||||| |||||||||| |||||||    
T  4612730 cattggctggactaaagaaaacaacagggattgaaagttcttcaccagcttgtatggtaaaag 4612668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 214 - 459
Target Start/End: Original strand, 4581029 - 4581278
Alignment:
Q  214 ctacatatatgaagaaagaaagaagattaattg----ttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaat 309  Q
    |||||| ||||||||||||||||||||||||||    ||||||||||||||||||| |||||| || | || |||| |||| |||| || ||||| |||     
T  4581029 ctacatctatgaagaaagaaagaagattaattgattgttaccttttagtggtatgacacctttgtcaaacagtgtaggtaagtgaaaacaagtcaaaaac 4581128  T
Q  310 gtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaa 409  Q
     |||||||| ||| ||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||  ||  | | |||||||||||| |||| |||    
T  4581129 atacatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatgctattatcagaaactatgcaagtaa 4581228  T
Q  410 caggaggaatatgaccatcattggaagaatctttaagtctagcaagaagt 459  Q
    | ||||| | | |||||  | ||| ||| || ||||||||||||||||||    
T  4581229 ctggagggacaagaccagaagtggcagagtcattaagtctagcaagaagt 4581278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 4571828 - 4571966
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtcaaatttttaaaagttgtt 119  Q
    ||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||  ||||||||||    
T  4571828 agtcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaatttacaaaagttgtt 4571927  T
Q  120 agcttgaaataaaatctccatactcctaatatatgtcat 158  Q
    ||  ||||||  |||||||||||||| ||||||||||||    
T  4571928 agtgtgaaattgaatctccatactccaaatatatgtcat 4571966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 4599216 - 4599346
Alignment:
Q  247 ttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattaggga 346  Q
    |||||||||||||||||||||| ||| || | ||||||  |||| || | || |||||  |||||||||||||||||||||||||||| |||| |||| |    
T  4599216 ttaccttttagtggtatgagacatttttcaaacaatgtcggtaagtgtaaacaagtcaagaatgtacatgcattggatggactaaagagaacaataggaa 4599315  T
Q  347 ttgaaagttcttcagcagcttgtatagtaaa 377  Q
     |||||||||||||||| |||||||||||||    
T  4599316 gtgaaagttcttcagcaacttgtatagtaaa 4599346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 459
Target Start/End: Original strand, 4569264 - 4569338
Alignment:
Q  386 caatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatc-tttaagtctagcaagaagt 459  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||    
T  4569264 caatatcagaaactaagcaactaacaggaggaataagatcatcattggaagaatcttttaagtttagcaagaagt 4569338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 4299095 - 4299015
Alignment:
Q  22 tcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtca 102  Q
    ||||||||||||||||||||||||||| || | |||  |||| |||||||||||||||||| ||||||||||||| |||||    
T  4299095 tcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctgcttgtca 4299015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 4599026 - 4599101
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctg 95  Q
    ||||||||||| |||| ||| ||||||||||| |||||||| ||||||||||||||||||| || ||| |||||||    
T  4599026 agtcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgtcagacgactatcatctg 4599101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 4514397 - 4514319
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcat 98  Q
    |||| ||||||  |||| |||||||| || || |||||||||||||||||||| ||||||||| |||||||||||||||    
T  4514397 agtctaaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcat 4514319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 4626810 - 4626883
Alignment:
Q  23 cgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgc 96  Q
    ||||||||||||||||| ||||||||||| | ||| ||||| |||||||| ||||||||| || ||||||||||    
T  4626810 cgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgc 4626883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4517195 - 4517255
Alignment:
Q  38 cctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcat 98  Q
    |||||||| || || |||||||||||||||||||| ||||||||| |||||||||||||||    
T  4517195 cctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcat 4517255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 4580914 - 4580972
Alignment:
Q  37 tcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctg 95  Q
    ||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||    
T  4580914 tcctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg 4580972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 4593093 - 4593174
Alignment:
Q  23 cgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtcaaa 104  Q
    |||||||| | ||| |||||||| ||||| |||||||| ||||||||||| ||||| | | ||||||||||||||| |||||    
T  4593093 cgaaagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgcatatcaaa 4593174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4506731 - 4506791
Alignment:
Q  38 cctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcat 98  Q
    |||||||| || || || ||||||||||||||||| ||||| | | |||||||||||||||    
T  4506731 cctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcat 4506791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 209 - 416
Target Start/End: Complemental strand, 16685408 - 16685201
Alignment:
Q  209 ctattctacatatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaataccagtcagaaa 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||  |||||||||  ||| | |||    
T  16685408 ctattctacatatatgaagaaagaaagaagattcattgttaccatttagtggtatgagacctttatccaacaatgtactaaaatgaataaaagttaaaaa 16685309  T
Q  309 tgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta 408  Q
    |||||||||||| |||||| |||||| ||||  ||||| |||||||||||||||||||||||||||||||| ||  | |||||||||||||| |||| ||    
T  16685308 tgtacatgcattcgatggattaaagagaacaacagggagtgaaagttcttcagcagcttgtatagtaaaagacatgctaatatcagaaactatgcaagta 16685209  T
Q  409 acaggagg 416  Q
    || |||||    
T  16685208 actggagg 16685201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 16685562 - 16685394
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgc--atgtcaaatttttaaaagttg 117  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||  || ||||||||  ||||||||    
T  16685562 agtcgaatattctgcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatatcaaatttacaaaagttg 16685463  T
Q  118 ttagcttgaaataaaatctccatactcctaatatatgtcatttgattttgaacactttaactattctacatatat 192  Q
    ||||||| ||||  |||||||||||| | || ||||||||      | |||||||| ||||||||||||||||||    
T  16685462 ttagcttaaaattgaatctccatacttcaaacatatgtca------tatgaacactctaactattctacatatat 16685394  T

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Target: scaffold0477 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 3962 - 3895
Alignment:
Q  23 cgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctc 90  Q
    |||||||||||||||||||||||||  || ||| || |||| |||||||| ||||||||| |||||||    
T  3962 cgaaagttctgcaatcctggaataccgtctactctattgtctaaatatccatttgtcaaataactctc 3895  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 1282560 - 1282624
Alignment:
Q  313 catgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaa 377  Q
    |||||| | ||||||  ||||| ||||||||||| || || ||||||||||||||||||||||||    
T  1282560 catgcacttgatggaaaaaagagaacattagggagtgcaaattcttcagcagcttgtatagtaaa 1282624  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 2994 - 2912
Alignment:
Q  20 agtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcaaacaactctcatctgcatgtca 102  Q
    ||||||||||| | ||  || ||||||||||| |||||  |||||||||||||  |||||||| |||| |||||||| |||||    
T  2994 agtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgcttgtca 2912  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 3087276 - 3087304
Alignment:
Q  20 agtcgaaagttctgcaatcctggaataca 48  Q
    |||||||||||||||||||||||||||||    
T  3087276 agtcgaaagttctgcaatcctggaataca 3087304  T

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