View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4076_low_8 (Length: 327)
Name: NF4076_low_8
Description: NF4076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4076_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 8252308 - 8252468
Alignment:
| Q |
10 |
tcttgtgcatgagttatttgaaaatatcataacaataagatttttaataataaaggaagctctacttatcaccttttgaataaagttaagttgttttctt |
109 |
Q |
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| T |
8252308 |
tcttgtgcatgagttatttgaaaacatcataacaa---gatttttaataatagaggaagctctacttatcacctcttggataaagttaagttgttttctt |
8252404 |
T |
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| Q |
110 |
actgatggcttaatataaaatttgctcatattgctttttactatcatagtcggtgtcgcaaccc |
173 |
Q |
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| T |
8252405 |
actgatggcttaatataaaatttgctcatattgcttttaactatcatagttggtgtcgcaaccc |
8252468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 8252533 - 8252622
Alignment:
| Q |
238 |
aacatattgcattttgctctgttaaaataaaattaacttatcgattatttactacttttatcaaattgagctaaatttgctctagttttt |
327 |
Q |
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| T |
8252533 |
aacatattccattttgctttgataaaataaaattaacttatcgattatctactacttttatcaaatagagctaaatttgctctagttttt |
8252622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 24248271 - 24248124
Alignment:
| Q |
10 |
tcttgtgcatgagttatttgaaaatatcataacaataagatttttaataataaaggaagctctacttatcaccttttgaataaagttaagttgttttctt |
109 |
Q |
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| T |
24248271 |
tcttgtgcatgggttatttggaaagatcggaacagcatgatttttaataataaaggaagctctaattatcacctcttgaacaaatttatgttgttttctt |
24248172 |
T |
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| Q |
110 |
actgatggcttaatataaaatttgctcatattgctttttactatcata |
157 |
Q |
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| T |
24248171 |
actagtgactgaaggcaaaatttgttcataatgcttttgactaccata |
24248124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 40930087 - 40930210
Alignment:
| Q |
43 |
aataagatttttaataataaaggaagctctacttatcaccttttgaataaagttaagttgttttcttactgatggcttaatataaaatttgctcatattg |
142 |
Q |
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| T |
40930087 |
aataggatttttaagaataaatgaagttctaattatcaccttttagataaaattaggttgttatcttactagtggttgaaagcaaaatttgctcatattg |
40930186 |
T |
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| Q |
143 |
ctttttactatcatagtcggtgtc |
166 |
Q |
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| T |
40930187 |
attttgaatatcatagtcggtgtc |
40930210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 11267652 - 11267801
Alignment:
| Q |
9 |
ttcttgtgcatgagttatttgaaaatatcataacaataagatttttaataataaaggaagctctacttatcaccttttgaataaagttaagttgttttct |
108 |
Q |
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||||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||||||||| | || |||| ||| ||||| || |||| |||||| |
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| T |
11267652 |
ttcttgtgcattggttatttgaaaagatcggaacaacatgatttttaataataaaggaagctctattaattacctcttggataaaattgagtt-ttttct |
11267750 |
T |
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| Q |
109 |
tactgatggcttaatataaaatttgctcatattgctttttactatcatagt |
159 |
Q |
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| T |
11267751 |
taccggtggccgaaagcacaatttgctcatattgcctttgactattatagt |
11267801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 1487187 - 1487146
Alignment:
| Q |
126 |
aaaatttgctcatattgctttttactatcatagtcggtgtcg |
167 |
Q |
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| T |
1487187 |
aaaagttgctcatattgcttttgactatcatagttggtgtcg |
1487146 |
T |
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