View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4077_low_1 (Length: 567)
Name: NF4077_low_1
Description: NF4077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4077_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 28536080 - 28536526
Alignment:
| Q |
1 |
tcatcgttgcagcgaacattatctatataaaaataccgagtacttaactcataagttgcattatctcttcgttgcagtgaacaatttttatttcaaatta |
100 |
Q |
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| T |
28536080 |
tcatcgttgcagcgaacattttctatttaaaaatacagagtacttaactcataagttgcattatctcttccttgcagtgaacaatttttatttcaaatca |
28536179 |
T |
|
| Q |
101 |
ctatgagtacttaacacataagttggattctctcttcgttgtagttcacgaaaatcatctttaattactatcaaccctcaacttataggttgtgttgtct |
200 |
Q |
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| T |
28536180 |
ctatgagtacttaacacataagttggattctctcttcgttgtagttcacgaaaatcgtctttaattactatcaaccctcaacttataggttgcgttgtct |
28536279 |
T |
|
| Q |
201 |
tttcgttacatcgagcaacttacattcaatctcttacatcaataaaaatttcattttaagtattcgaaatcaagtattttacatcaataaaaatttcgac |
300 |
Q |
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| T |
28536280 |
tttcgttacatcgagcaacttacattcaatctcttacatcaataaaaatttcactttaagtattcgaaatcaagtattttacatcaataaaaatttcaac |
28536379 |
T |
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| Q |
301 |
aacaatcacaactgtatttcatctcaaatgtttcataatttcaaacaaactatcagctcacagaaattataattatagcttgagatagacaactaacaac |
400 |
Q |
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| T |
28536380 |
aacaatcacaactgtatttcatctcaaatgtttcataatttcaaacaaactatcagctcaaagaaattataattatagcttgagatagacaactaacaac |
28536479 |
T |
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| Q |
401 |
ataagtgctaaggtataaaaacaaactgaataatcaacaatagtctgca |
449 |
Q |
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| T |
28536480 |
ataagtgctaaggtataaaaacaaactga--aatcaacaatagtctgca |
28536526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 25067005 - 25066924
Alignment:
| Q |
38 |
gagtacttaactcataagttgcattatctcttcgttgcagtgaacaatttttatttcaaattactatgagtacttaacacata |
120 |
Q |
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|||||| |||||||||||||| |||||||| || ||| || ||||| ||| ||||| ||| ||||||||||| ||||| |||| |
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| T |
25067005 |
gagtacgtaactcataagttgaattatctcctccttggagcgaacattttgtattttaaa-tactatgagtatttaactcata |
25066924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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