View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4077_low_2 (Length: 393)
Name: NF4077_low_2
Description: NF4077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4077_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 95 - 385
Target Start/End: Complemental strand, 33969705 - 33969415
Alignment:
| Q |
95 |
cattaaaatggttctaaaaatccaaaacagtagtataacttcatgaaattaatgaacctttcattgtcataatgtaatatagaaatcatgcacacatata |
194 |
Q |
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| T |
33969705 |
cattaaaatggttctaaaaatccaaaacagtagtataacttcatgaaattaatgaacctttcattgtcataatgtaatatagaaatcatgcacacatata |
33969606 |
T |
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| Q |
195 |
atatatttttgaaaactctaatgaaatcaaccaacaaaggtaggttaaaggtgcgnnnnnnnnnnnnnnnntcttggcgacatctttgactagaccacgg |
294 |
Q |
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| T |
33969605 |
atatatttttgaaaactctaatgaaatcaaccaacaaaggtaggttaaaggtgcgaaaaaaagttaaaaaatcttggcgacatctttgactagaccacgg |
33969506 |
T |
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| Q |
295 |
ttggcttttgcgaattcagtgaactcatcataagaaatgaatccgtcaccatcagtatcaatctcttccatcattctcttcacttcatctc |
385 |
Q |
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| T |
33969505 |
ttggcttttgcgaattcagtgaactcatcataagaaatgaatccgtcgccatcagtatcaatctcttccatcattctcttcacttcatctc |
33969415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 33970095 - 33970018
Alignment:
| Q |
20 |
cattatcaagtctataatatgatatctgagaaattgaaacataaaccgttcaatcatgatgtta-tttattcacttcat |
97 |
Q |
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| T |
33970095 |
cattatcaagtctataatatgatat-tgagaaattgaaacataaatcgttcaatcatgatgttactttattcacttcat |
33970018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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