View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4077_low_3 (Length: 354)
Name: NF4077_low_3
Description: NF4077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4077_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 525677 - 525343
Alignment:
| Q |
6 |
agcagcagagaaacatgggtttgtacacacgtacagctgtgagtctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctct |
105 |
Q |
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| T |
525677 |
agcaggagagaaacatgggtttgtacacacgtacagctgtgagtctgtgactgcggcgagggagtgagcgaaatggtttgttattttttgtcctttctct |
525578 |
T |
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| Q |
106 |
cttttgttctcatcctcctaatcacacgcaacgcagcgtcctttattcttttttcctaggacttgaatcacttatttcactactatactagctagtggta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
525577 |
cttttgttctcatcctcctaatcacacgcaacgcagcgtcctttattcttttttcctaggacttgaatcacttatttcactactatactagctagtggta |
525478 |
T |
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| Q |
206 |
ttaaataaaatagtaacctcaactgtttcagggacgaattcatttaattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
525477 |
ttaaataaaatagtaacctcaactgtttcagggacgaattcatttaattttattcaacatgcaaaattcaatcgtatattttttaaaggaacctccaaat |
525378 |
T |
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| Q |
306 |
agttagtttattgttcgctttcttttccccaaatt |
340 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
525377 |
agttagtttattgttcgctttcttttccccaaatt |
525343 |
T |
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