View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4077_low_4 (Length: 341)
Name: NF4077_low_4
Description: NF4077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4077_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 9933862 - 9933641
Alignment:
| Q |
102 |
aaaagtttaataaattacattcctcccctagttgatagccgtccatggataattttatatgagagatctcaatggtgtcatgccatgacaaagggctgta |
201 |
Q |
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| T |
9933862 |
aaaagtttaataaattacatgactcccctagttgatagccgtccatgtataattttatatgagagatctcaatagtgtcatgccatgacaaagggctgta |
9933763 |
T |
|
| Q |
202 |
actttcaagttatcgttttatccaatgcctctgccgaatttgatgtgaaccaaacccttctgtttgtcttatcttctattttgaactaaattccgttctc |
301 |
Q |
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| T |
9933762 |
actttcaagttatcgttttatccaatgcctctgccgaatttgatgtgaaccaaacccttctatttgtcttatcttccattttgaactaaattccgttctc |
9933663 |
T |
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| Q |
302 |
cttgaattttatgctgtccttt |
323 |
Q |
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||||||||||||| |||||||| |
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| T |
9933662 |
cttgaattttatgttgtccttt |
9933641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 323
Target Start/End: Complemental strand, 9938745 - 9938605
Alignment:
| Q |
185 |
catgacaaagggctgtaactttcaag-ttatcgttttatccaatgcctctgccgaatttgatgtgaaccaaacccttctgtttgtcttatcttct-attt |
282 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
9938745 |
catgacatagggctgtaactttcaaacttatcgttttatccaatgcctctgccgaatttgatgttaaccaaaccattctatttgtcttatcttctaattt |
9938646 |
T |
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| Q |
283 |
tgaactaaattccgttctccttgaattttatgctgtccttt |
323 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
9938645 |
tgaattaatttccgttctccttgaattttatgttgtccttt |
9938605 |
T |
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