View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4077_low_6 (Length: 242)
Name: NF4077_low_6
Description: NF4077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4077_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28535998 - 28535771
Alignment:
| Q |
1 |
ttcagtgttgtgaa-tagaaattgttagctccaacgaagaatattgcagtctaagtactcagtgtgttttgaaatagaaactattagctccaacaatgat |
99 |
Q |
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| T |
28535998 |
ttcagtgttttgaaatagaaattgttagctccaacgaagaatattgcagtctaagtactcatagtgttttgaaatagaaactattagctccaacaatgat |
28535899 |
T |
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| Q |
100 |
ataatgcagtttatgacttaagaactaataatattttggaatagaaaatgttcgccgcaagaagaatgcaacataatagttaaatactcatagtcttttc |
199 |
Q |
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| T |
28535898 |
ataatgcagtttatgacttaagaactaataatattttggaatagaaaatgttcgccgcaagaagaatgcaacataatagttaaatactcatagtattttc |
28535799 |
T |
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| Q |
200 |
agaaaattaccctttacccagaaaaact |
227 |
Q |
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| T |
28535798 |
aaaaaattaccatttacccagaaaaact |
28535771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28536055 - 28535964
Alignment:
| Q |
1 |
ttcagtgttgtgaatagaaattgttagctccaacg-aagaatattgcagtctaagtactcagtgtgttttgaaatagaaactattagctccaac |
93 |
Q |
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|||||||||||||||||||||||||||| ||||| || || | |||||| ||| || ||| ||||||||||||||||| | ||||||||||| |
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| T |
28536055 |
ttcagtgttgtgaatagaaattgttagccgcaacgaaaaaagaatgcagtgtaaatattca--gtgttttgaaatagaaattgttagctccaac |
28535964 |
T |
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