View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4078_high_1 (Length: 610)
Name: NF4078_high_1
Description: NF4078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4078_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 125 - 595
Target Start/End: Original strand, 29770725 - 29771195
Alignment:
| Q |
125 |
atcaaatatacttttcatcacactcaaaacaaagggaacacgttagacaaaaatagtgagttataagtccaaatgccatatccaaaaaa-tatagtaagt |
223 |
Q |
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| T |
29770725 |
atcaaatatacttttcatcacactcaaaacaaagggaacacgttagacaaaaatagtgagttatacgtccaaatgccatatccaaaaaaatatagtaagt |
29770824 |
T |
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| Q |
224 |
tagcaacatgttcaacttcaacaaggttatgatatgctgatctagctttgtgaccatagttttatcaaaactaacttgcgagcaagttcattaaacttat |
323 |
Q |
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| T |
29770825 |
tagcaacatgttcaacttcaacaaggttatgatatgctgatctagctttgtgaccctagttttatcaaa-ctaacttgcgagcaagttcattaaacttat |
29770923 |
T |
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| Q |
324 |
gagctagcttgtcccgnnnnnnnnnnnnn-----aatttaaaatagtttaatcaaacggataggctttgtttgtgataaatagtttaatttaaaaacgac |
418 |
Q |
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| T |
29770924 |
gagctaacctgtccttttttttttttttttttttaatttaaaatagtttaatcaaac--atatgctttgtttgtgataagtagtttactttaaaaacgac |
29771021 |
T |
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| Q |
419 |
attatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatat |
518 |
Q |
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| T |
29771022 |
attatagtacttaattaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatat |
29771121 |
T |
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| Q |
519 |
caaggtgatgtaatacaattgatagaaaacctaattcataactactccattataataaccccattttctcctctgtg |
595 |
Q |
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| T |
29771122 |
caaggtgatgtaatacaattgatagaaaacctaattcataactactccatt---ataaccccattttctcctctgtg |
29771195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 29770624 - 29770694
Alignment:
| Q |
30 |
taagcctgagattaattgtatcctctcctctacctatatttccaacttaacaatcttccattttctcattc |
100 |
Q |
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| T |
29770624 |
taagcctgagattaattgtatcctctcttctacctatatttccaacttaacaatcttccattttctcattc |
29770694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 29770576 - 29770606
Alignment:
| Q |
16 |
aggattaactaacataagcctgagattaatt |
46 |
Q |
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| T |
29770576 |
aggattaactaacataagcctgagattaatt |
29770606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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