View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4078_high_1_N (Length: 364)
Name: NF4078_high_1_N
Description: NF4078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4078_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 175 - 354
Target Start/End: Original strand, 52722159 - 52722338
Alignment:
| Q |
175 |
taatataagccgtgaaagacatataaaatagttttgattggtgtcaactgaacatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
274 |
Q |
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| T |
52722159 |
taatataaaccgtaaaagacaaatgaaatagttttgattggtgtcaactgaatatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
52722258 |
T |
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| Q |
275 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
354 |
Q |
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| T |
52722259 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
52722338 |
T |
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Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 52720410 - 52720595
Alignment:
| Q |
1 |
aggttccttataatttaatcaagatgatatgaggatcaacaagcaccg----tataggattaatttaaaaaggaaagcaaattattacctacccatcaac |
96 |
Q |
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| T |
52720410 |
aggttccttataatttaatcaagatgatatgaggatcaacaagcaccgcgcgtataggattaatttaaaaaggaaagcaaattattacctacccatcaac |
52720509 |
T |
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| Q |
97 |
aaaaggtggatagagttacccatattgagttcgtatcgatcaaaattattcatatgcccactatataaactatatctataatataa |
182 |
Q |
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| T |
52720510 |
gaaaggtggatagagttacccatattgagttcgcatcaatcaaaatcattcatatgcccgctatataaactatatatataatataa |
52720595 |
T |
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