View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4078_high_2 (Length: 341)
Name: NF4078_high_2
Description: NF4078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4078_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 6752895 - 6753222
Alignment:
| Q |
1 |
ggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgtcgttcttatggagacgcactgtcagtttgc |
100 |
Q |
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| T |
6752895 |
ggggtgccgttaataaggagggtaagagacgaacccgagtccttattaaaagatataaacctttacttgttgttcttatggagacgcactgtcagttttc |
6752994 |
T |
|
| Q |
101 |
tatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaat |
200 |
Q |
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| T |
6752995 |
tagagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaat |
6753094 |
T |
|
| Q |
201 |
tgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753095 |
tgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgcta |
6753194 |
T |
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| Q |
301 |
gccctcaggttacaaatcgtgaccatct |
328 |
Q |
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| T |
6753195 |
gccctcaggttacaaatcgtgaccatct |
6753222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 1811639 - 1811312
Alignment:
| Q |
1 |
ggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgtcgttcttatggagacgcactgtcagtttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
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| T |
1811639 |
ggggtgccgttaataaggagggtaagagacaaacccgagtccttattaaaagatataaacctttacttgttgttcttatggagacgcactctcagttttc |
1811540 |
T |
|
| Q |
101 |
tatagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaat |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1811539 |
tagagttaaaaatttctggtgtaacctaggctatgagaattgtgcaatttctgaagctcgtggacactctggaggtatatggatattaaaatctcaaaat |
1811440 |
T |
|
| Q |
201 |
tgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811439 |
tgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgcta |
1811340 |
T |
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| Q |
301 |
gccctcaggttacaaatcgtgaccatct |
328 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
1811339 |
gccctcaggttacaaatcgtgatcatct |
1811312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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