View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4079_high_1 (Length: 395)
Name: NF4079_high_1
Description: NF4079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4079_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 8457771 - 8458140
Alignment:
| Q |
17 |
tgaacacggcgttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaatcgtgagataatgttgctaaaccaaattgattcttacatattc |
116 |
Q |
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| T |
8457771 |
tgaacacggcgttagtagataaatttttcatttgttttgctgtcatcaaaacatcaatcgtgagataatgtggctaaaccaaattgattcttacatattc |
8457870 |
T |
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| Q |
117 |
aaagacttgaaaattagcatgcatatcaatgttcnnnnnnnnacgcaagaattgaaatcaagaactttagtgtaatttattttcttactactttatccac |
216 |
Q |
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| T |
8457871 |
aaggacttgaaaattaacatgcatatcaatgttcttttttttacgcaagaattgaaatcaagaactttagtgtaatttattttcttactactttatccac |
8457970 |
T |
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| Q |
217 |
actttcaaaacactttcggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgtgtagtttctttca |
316 |
Q |
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| T |
8457971 |
actttcaaaacacttttggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgtgtagtttctttca |
8458070 |
T |
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| Q |
317 |
acaagtagggtccaaaagtgctaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
386 |
Q |
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| T |
8458071 |
acaagtagggtccaaaagtggtaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
8458140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 32652169 - 32652123
Alignment:
| Q |
27 |
gttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaa |
73 |
Q |
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| T |
32652169 |
gttagcagacaaattatttatttgttttgttatcatcaaaacatcaa |
32652123 |
T |
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