View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4079_high_2 (Length: 355)

Name: NF4079_high_2
Description: NF4079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4079_high_2
NF4079_high_2
[»] chr7 (34 HSPs)
chr7 (220-267)||(34590565-34590612)
chr7 (180-267)||(16564885-16564978)
chr7 (180-267)||(16600684-16600777)
chr7 (181-267)||(29646056-29646148)
chr7 (181-267)||(33833942-33834034)
chr7 (181-267)||(33855683-33855775)
chr7 (181-267)||(16565090-16565182)
chr7 (181-267)||(16600480-16600572)
chr7 (220-255)||(36492575-36492610)
chr7 (181-273)||(4258216-4258316)
chr7 (225-267)||(7832983-7833025)
chr7 (225-267)||(43167913-43167955)
chr7 (220-267)||(4258020-4258067)
chr7 (181-257)||(10903514-10903596)
chr7 (220-267)||(33834192-33834239)
chr7 (220-255)||(37272077-37272112)
chr7 (220-267)||(47856011-47856058)
chr7 (225-255)||(257299-257329)
chr7 (225-255)||(1661223-1661253)
chr7 (225-255)||(7135275-7135305)
chr7 (225-267)||(9379042-9379084)
chr7 (222-252)||(22206313-22206343)
chr7 (222-252)||(22228396-22228426)
chr7 (225-255)||(28910074-28910104)
chr7 (225-267)||(29645857-29645899)
chr7 (225-255)||(41670625-41670655)
chr7 (225-255)||(43288574-43288604)
chr7 (225-255)||(43384312-43384342)
chr7 (220-254)||(44760540-44760574)
chr7 (220-261)||(42556124-42556165)
chr7 (225-253)||(6813317-6813345)
chr7 (220-256)||(31149094-31149130)
chr7 (220-256)||(31167386-31167422)
chr7 (225-253)||(40703445-40703473)
[»] chr4 (30 HSPs)
chr4 (220-267)||(56511334-56511381)
chr4 (220-267)||(53863942-53863989)
chr4 (220-267)||(56511541-56511588)
chr4 (181-267)||(10390495-10390587)
chr4 (220-267)||(14594877-14594924)
chr4 (220-267)||(22865806-22865853)
chr4 (220-267)||(41743573-41743620)
chr4 (220-254)||(27048170-27048204)
chr4 (225-267)||(50307318-50307360)
chr4 (220-268)||(10390695-10390743)
chr4 (181-267)||(14945135-14945227)
chr4 (220-267)||(14115765-14115812)
chr4 (220-255)||(27048440-27048475)
chr4 (220-255)||(28085731-28085766)
chr4 (220-255)||(52214652-52214687)
chr4 (220-255)||(52827264-52827299)
chr4 (225-255)||(990589-990619)
chr4 (225-255)||(991079-991109)
chr4 (225-255)||(21497715-21497745)
chr4 (225-255)||(21498229-21498259)
chr4 (225-255)||(22867126-22867156)
chr4 (225-255)||(29669395-29669425)
chr4 (225-255)||(29669710-29669740)
chr4 (225-255)||(45426968-45426998)
chr4 (225-255)||(45427284-45427314)
chr4 (225-255)||(48843049-48843079)
chr4 (225-255)||(51469523-51469553)
chr4 (225-255)||(53740224-53740254)
chr4 (222-255)||(32987503-32987536)
chr4 (222-255)||(43972394-43972427)
[»] chr3 (30 HSPs)
chr3 (220-267)||(35011901-35011948)
chr3 (225-267)||(50203877-50203919)
chr3 (181-255)||(12799872-12799942)
chr3 (181-267)||(35011649-35011741)
chr3 (220-267)||(53761418-53761465)
chr3 (181-267)||(26926900-26926991)
chr3 (227-268)||(44461332-44461373)
chr3 (181-267)||(19984433-19984513)
chr3 (220-267)||(29763716-29763763)
chr3 (220-267)||(35015522-35015569)
chr3 (220-267)||(39269082-39269129)
chr3 (220-267)||(44367815-44367862)
chr3 (225-255)||(13769323-13769353)
chr3 (225-255)||(21750517-21750547)
chr3 (225-255)||(24860093-24860123)
chr3 (225-255)||(27219371-27219401)
chr3 (225-255)||(31563731-31563761)
chr3 (225-255)||(31564035-31564065)
chr3 (225-255)||(34715487-34715517)
chr3 (225-255)||(38300784-38300814)
chr3 (225-255)||(43101403-43101433)
chr3 (225-255)||(44573681-44573711)
chr3 (225-255)||(44573978-44574008)
chr3 (226-255)||(10453735-10453764)
chr3 (226-255)||(47833694-47833723)
chr3 (222-255)||(49477366-49477399)
chr3 (225-266)||(54369081-54369122)
chr3 (181-217)||(10758844-10758880)
chr3 (227-255)||(14170031-14170059)
chr3 (181-217)||(42637823-42637859)
[»] chr1 (25 HSPs)
chr1 (220-267)||(38871175-38871222)
chr1 (220-267)||(38870969-38871016)
chr1 (189-267)||(6237988-6238065)
chr1 (185-267)||(22826765-22826853)
chr1 (220-267)||(6238357-6238404)
chr1 (220-267)||(10017348-10017395)
chr1 (220-267)||(29413385-29413432)
chr1 (181-267)||(47377827-47377922)
chr1 (220-256)||(35892058-35892094)
chr1 (223-267)||(45982371-45982415)
chr1 (225-255)||(2697363-2697393)
chr1 (225-255)||(4022157-4022187)
chr1 (225-255)||(17419829-17419859)
chr1 (225-255)||(19937075-19937105)
chr1 (220-266)||(20429256-20429302)
chr1 (225-255)||(20735797-20735827)
chr1 (225-255)||(31305753-31305783)
chr1 (225-255)||(36326948-36326978)
chr1 (225-267)||(37600914-37600956)
chr1 (225-255)||(38474325-38474355)
chr1 (225-255)||(43423321-43423351)
chr1 (225-255)||(45403482-45403512)
chr1 (227-255)||(20735566-20735594)
chr1 (227-267)||(21538954-21538994)
chr1 (225-253)||(22892467-22892495)
[»] chr6 (9 HSPs)
chr6 (220-267)||(25999060-25999107)
chr6 (220-267)||(26098791-26098838)
chr6 (180-267)||(25998808-25998901)
chr6 (180-267)||(26098333-26098426)
chr6 (220-267)||(26098585-26098632)
chr6 (225-255)||(1744874-1744904)
chr6 (225-255)||(8144059-8144089)
chr6 (225-255)||(10418370-10418400)
chr6 (223-255)||(29742468-29742500)
[»] chr8 (17 HSPs)
chr8 (181-267)||(43901037-43901129)
chr8 (221-267)||(25186562-25186608)
chr8 (225-267)||(39588104-39588146)
chr8 (196-267)||(41456342-41456416)
chr8 (220-267)||(3895168-3895215)
chr8 (220-267)||(15968206-15968253)
chr8 (220-255)||(34248114-34248149)
chr8 (220-255)||(34248396-34248431)
chr8 (220-255)||(36997203-36997238)
chr8 (225-255)||(18905898-18905928)
chr8 (225-255)||(20298548-20298578)
chr8 (225-255)||(21085180-21085210)
chr8 (181-277)||(22188927-22189018)
chr8 (225-255)||(32931443-32931473)
chr8 (225-267)||(39587878-39587920)
chr8 (222-255)||(21653843-21653876)
chr8 (181-273)||(41456521-41456607)
[»] chr5 (10 HSPs)
chr5 (181-267)||(39268010-39268102)
chr5 (181-267)||(39268218-39268310)
chr5 (227-267)||(18107877-18107917)
chr5 (225-267)||(1028113-1028155)
chr5 (220-256)||(2716380-2716416)
chr5 (182-267)||(18873214-18873305)
chr5 (220-267)||(2716583-2716630)
chr5 (181-255)||(28156028-28156102)
chr5 (222-252)||(29396378-29396408)
chr5 (222-255)||(48343-48376)
[»] chr2 (19 HSPs)
chr2 (181-267)||(39386662-39386754)
chr2 (181-267)||(27545136-27545228)
chr2 (220-267)||(8044565-8044613)
chr2 (223-255)||(15061297-15061329)
chr2 (220-268)||(22447342-22447390)
chr2 (220-255)||(10849523-10849558)
chr2 (225-277)||(30156250-30156304)
chr2 (225-255)||(3976503-3976533)
chr2 (225-267)||(10536949-10536991)
chr2 (225-255)||(11969094-11969124)
chr2 (221-267)||(17264995-17265041)
chr2 (225-255)||(17509151-17509181)
chr2 (225-255)||(21213917-21213947)
chr2 (225-255)||(21214233-21214263)
chr2 (225-255)||(23054368-23054398)
chr2 (225-255)||(42768366-42768396)
chr2 (225-255)||(43195826-43195856)
chr2 (225-254)||(43169284-43169313)
chr2 (180-277)||(29676143-29676245)
[»] scaffold0005 (1 HSPs)
scaffold0005 (220-267)||(222454-222501)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 34590565 - 34590612
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34590565 ataagagtttataaagaggaggcactcctcaccttatgaaccggtttt 34590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 16564885 - 16564978
Alignment:
Q  180 ctattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16564885 ctattgggaaaaacccaagtcccacatcggatagataagactcttaataagagtttataaataggaggcactcctcaccttatgaaccggtttt 16564978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 16600777 - 16600684
Alignment:
Q  180 ctattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16600777 ctattgggaaaaacccaagtcccacatcggatagataagactcttaataagagtttataaataggaggcactcctcaccttatgaaccggtttt 16600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 29646056 - 29646148
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| ||||| ||||||||||||||||||||||||      | |||  |||||||| |||||||||| |||||||||||||||||||||||    
T  29646056 tattgggaaaaattcatgtcccacattggatagataagactcttgataggagtttatatagaggaggcaatcctcaccttatgaaccggtttt 29646148  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 33833942 - 33834034
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||| |||||||||||| ||||||||||      | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  33833942 tattggaaaaaacccatgtcccacatcggatagataagactcttgataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 33834034  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 33855683 - 33855775
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  33855683 tattgggaaaaacccaagtcccacatcggatagataagactcatgataatagtttataaagaggagacactcctcaccttatgaaccggtttt 33855775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 16565090 - 16565182
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  16565090 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttataaataggaggcactcctcaccttatgaaccgatttt 16565182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 16600572 - 16600480
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  16600572 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttataaataggaggcactcctcaccttatgaaccgatttt 16600480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 36492610 - 36492575
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    ||||||||||||||||||||||||||||||||||||    
T  36492610 ataaaagtttataaagaggaggcactcctcacctta 36492575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 4258316 - 4258216
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccgg--ttttaagga 272  Q
    |||||| ||||||||| ||||||||| ||||||||||      | |||| ||||||  || ||||||||||||||||||||||||||||  |||||||||    
T  4258316 tattgggaaaaactcaagtcccacatcggatagataagactcttgataagagtttaccaataggaggcactcctcaccttatgaaccggctttttaagga 4258217  T
Q  273 t 273  Q
    |    
T  4258216 t 4258216  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 7833025 - 7832983
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  7833025 agtttatatagaggaggcaatcctcaccttatgaaccggtttt 7832983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 43167955 - 43167913
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  43167955 agtttataaagaggaggcaatcctcaccttatgagccggtttt 43167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 4258067 - 4258020
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| ||||||| || |||||||||||||||||||||||||| |||||    
T  4258067 ataagagtttatcaataggaggcactcctcaccttatgaaccagtttt 4258020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 10903596 - 10903514
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatg 257  Q
    |||||| ||||||||||||||||||| ||||||||||      | |||| |||||||| |||||||||| |||||| ||||||    
T  10903596 tattgggaaaaactcatgtcccacatcggatagataagactcttgataagagtttatatagaggaggcaatcctcaacttatg 10903514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 33834192 - 33834239
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  33834192 ataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 33834239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 37272112 - 37272077
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  37272112 ataagagtttataaagaggaggcactcctcacctta 37272077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 47856058 - 47856011
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| ||||||||||||||||||||||| |||||||||| ||| ||||    
T  47856058 ataagagtttataaagaggaggcactccccaccttatgagccgatttt 47856011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 257329 - 257299
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  257329 agtttataaagaggaggcactcctcacctta 257299  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 1661253 - 1661223
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  1661253 agtttataaagaggaggcactcctcacctta 1661223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 7135305 - 7135275
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  7135305 agtttataaagaggaggcactcctcacctta 7135275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 9379042 - 9379084
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||||||||| |||||||||||  ||||||||||    
T  9379042 agtttataaagaggaggcaatcctcaccttacaaaccggtttt 9379084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 22206343 - 22206313
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacc 252  Q
    |||||||||||||||||||||||||||||||    
T  22206343 aaaagtttataaagaggaggcactcctcacc 22206313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 22228396 - 22228426
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacc 252  Q
    |||||||||||||||||||||||||||||||    
T  22228396 aaaagtttataaagaggaggcactcctcacc 22228426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 28910074 - 28910104
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  28910074 agtttataaagaggaggcactcctcacctta 28910104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 29645857 - 29645899
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  29645857 agtttatataaaggaggcaatcctcaccttatgaaccggtttt 29645899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 41670625 - 41670655
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  41670625 agtttataaagaggaggcactcctcacctta 41670655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 43288574 - 43288604
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  43288574 agtttataaagaggaggcactcctcacctta 43288604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 43384342 - 43384312
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  43384342 agtttataaagaggaggcactcctcacctta 43384312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 44760574 - 44760540
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctt 254  Q
    |||| ||||||||||||||||||||||||||||||    
T  44760574 ataagagtttataaagaggaggcactcctcacctt 44760540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 42556124 - 42556165
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaacc 261  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||    
T  42556124 ataaaagtttataaagaagagacactcttcaccttatgaacc 42556165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 6813345 - 6813317
Alignment:
Q  225 agtttataaagaggaggcactcctcacct 253  Q
    |||||||||||||||||||||||||||||    
T  6813345 agtttataaagaggaggcactcctcacct 6813317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 31149094 - 31149130
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttat 256  Q
    |||| |||||| |||||||||||||||||||||||||    
T  31149094 ataagagtttacaaagaggaggcactcctcaccttat 31149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 31167386 - 31167422
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttat 256  Q
    |||| |||||| |||||||||||||||||||||||||    
T  31167386 ataagagtttacaaagaggaggcactcctcaccttat 31167422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 40703473 - 40703445
Alignment:
Q  225 agtttataaagaggaggcactcctcacct 253  Q
    |||||||||||||||||||||||||||||    
T  40703473 agtttataaagaggaggcactcctcacct 40703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 56511334 - 56511381
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  56511334 ataagagtttataaagaggaggcactcctcaccttatgaaccggtttt 56511381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 53863942 - 53863989
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  53863942 ataatagtttataaagaggagacactcctcaccttatgaaccggtttt 53863989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 56511541 - 56511588
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  56511541 ataagagtttataaagaggaggcactcctcaccttatgaaccgatttt 56511588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 10390587 - 10390495
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataatt------ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||| |||||| ||| |||||||||||||||||||| |      |||| |||||||||||||||| || ||||||||||||||||| |||||    
T  10390587 tattgaaaaaaattcaagtcccacattggatagataagtctcttgataatagtttataaagaggagacattcctcaccttatgaaccagtttt 10390495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 14594877 - 14594924
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  14594877 ataagagtttataaagaggaggcactcttcaccttatgaaccgatttt 14594924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 22865806 - 22865853
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||    
T  22865806 ataatagtttataaagagggggcagtcctcaccttatgaaccggtttt 22865853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 41743573 - 41743620
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||    
T  41743573 ataagagtttatatagaggaggcaatcctcaccttatgaaccggtttt 41743620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 27048204 - 27048170
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctt 254  Q
    |||||||||||||||||||||||||||||||||||    
T  27048204 ataaaagtttataaagaggaggcactcctcacctt 27048170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 50307318 - 50307360
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  50307318 agtttataaagcggaggcactcctcaccttatgaaccagtttt 50307360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 10390743 - 10390695
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttta 268  Q
    |||| |||||||||||||||| ||||||||||||||| |||| ||||||    
T  10390743 ataatagtttataaagaggagacactcctcaccttatcaaccagtttta 10390695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 14945135 - 14945227
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa-----ttataaa-agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| |||||||||||| ||||||||||     ||  ||| |||||||| |||||| ||| |||||||||||||||||||||||    
T  14945135 tattgggaaaaacacatgtcccacatcggatagataagactcttcgaaagagtttatatagaggatgcaatcctcaccttatgaaccggtttt 14945227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 14115812 - 14115765
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||| ||| |||||||||||||||||||||||    
T  14115812 ataagagtttatatagaggatgcaatcctcaccttatgaaccggtttt 14115765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 27048475 - 27048440
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  27048475 ataagagtttataaagaggaggcactcctcacctta 27048440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 28085731 - 28085766
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  28085731 ataagagtttataaagaggaggcactcctcacctta 28085766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 52214652 - 52214687
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  52214652 ataagagtttataaagaggaggcactcctcacctta 52214687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 52827299 - 52827264
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  52827299 ataagagtttataaagaggaggcactcctcacctta 52827264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 990589 - 990619
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  990589 agtttataaagaggaggcactcctcacctta 990619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 991079 - 991109
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  991079 agtttataaagaggaggcactcctcacctta 991109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 21497745 - 21497715
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21497745 agtttataaagaggaggcactcctcacctta 21497715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 21498229 - 21498259
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21498229 agtttataaagaggaggcactcctcacctta 21498259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 22867126 - 22867156
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  22867126 agtttataaagaggaggcactcctcacctta 22867156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 29669425 - 29669395
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  29669425 agtttataaagaggaggcactcctcacctta 29669395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 29669740 - 29669710
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  29669740 agtttataaagaggaggcactcctcacctta 29669710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 45426998 - 45426968
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  45426998 agtttataaagaggaggcactcctcacctta 45426968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 45427314 - 45427284
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  45427314 agtttataaagaggaggcactcctcacctta 45427284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 48843079 - 48843049
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  48843079 agtttataaagaggaggcactcctcacctta 48843049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 51469523 - 51469553
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  51469523 agtttataaagaggaggcactcctcacctta 51469553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 53740224 - 53740254
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  53740224 agtttataaagaggaggcactcctcacctta 53740254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 32987536 - 32987503
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||| |||||||    
T  32987536 aaaagtttataaagaggaggcactccgcacctta 32987503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 43972394 - 43972427
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacctta 255  Q
    ||||||| ||||||||||||||||||||||||||    
T  43972394 aaaagttgataaagaggaggcactcctcacctta 43972427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 35011901 - 35011948
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  35011901 ataagagtttataaagaggaggcactcctcaccttatgaaccggtttt 35011948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 50203919 - 50203877
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  50203919 agtttataaagaggaggcactcctcaccttataaaccggtttt 50203877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 12799872 - 12799942
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||| ||||||||| |||||||    ||||| ||||||||||||| ||||| |||||||||||    
T  12799872 tattggaaaaaactcaagtcccacatcggataga----tataagagtttataaagagaaggcaatcctcacctta 12799942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 35011649 - 35011741
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||| || |||||||||||  |||||||      | |||| || ||||||||||||| ||||||||||||||||||||||||||    
T  35011649 tattggaaaaaacccaagtcccacattgagtagataagactcttgataagagattataaagaggagacactcctcaccttatgaaccggtttt 35011741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 53761465 - 53761418
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  53761465 ataagagtttataaagaggaggcactcctcacctaatgagccggtttt 53761418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 26926900 - 26926991
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||| ||||||||||||  |||||||||      | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  26926900 tattggaaaaaac-catgtcccacatcagatagataagactcttgataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 26926991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 44461332 - 44461373
Alignment:
Q  227 tttataaagaggaggcactcctcaccttatgaaccggtttta 268  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  44461332 tttataaagaggagacactcctcaccttatgaaccagtttta 44461373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 19984513 - 19984433
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| ||||||||||||||||||| ||||||      |||| |||||||| |||||||||| ||| ||||||| || ||||||||    
T  19984513 tattgggaaaaactcatgtcccacatcggatag------ataagagtttatatagaggaggcaatccgcaccttacgatccggtttt 19984433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 29763763 - 29763716
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||||    
T  29763763 ataagagtttataaagaggagacactccccatcttatgaaccggtttt 29763716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 35015522 - 35015569
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||| ||||||| |||| | ||||||||    
T  35015522 ataaaagtttataaagaggaggcaatcctcactttataagccggtttt 35015569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 39269082 - 39269129
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||||||| ||||||||||||||||| |||||    
T  39269082 ataagagtttatatagaggaggcaatcctcaccttatgaaccagtttt 39269129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 44367815 - 44367862
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||||||| ||||||||||||||||| |||||    
T  44367815 ataagagtttatatagaggaggcaatcctcaccttatgaaccagtttt 44367862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 13769353 - 13769323
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  13769353 agtttataaagaggaggcactcctcacctta 13769323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 21750517 - 21750547
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21750517 agtttataaagaggaggcactcctcacctta 21750547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 24860123 - 24860093
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  24860123 agtttataaagaggaggcactcctcacctta 24860093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 27219371 - 27219401
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  27219371 agtttataaagaggaggcactcctcacctta 27219401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 31563761 - 31563731
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  31563761 agtttataaagaggaggcactcctcacctta 31563731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 31564065 - 31564035
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  31564065 agtttataaagaggaggcactcctcacctta 31564035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 34715517 - 34715487
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  34715517 agtttataaagaggaggcactcctcacctta 34715487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 38300814 - 38300784
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  38300814 agtttataaagaggaggcactcctcacctta 38300784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 43101433 - 43101403
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  43101433 agtttataaagaggaggcactcctcacctta 43101403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 44573681 - 44573711
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  44573681 agtttataaagaggaggcactcctcacctta 44573711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 44573978 - 44574008
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  44573978 agtttataaagaggaggcactcctcacctta 44574008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 10453764 - 10453735
Alignment:
Q  226 gtttataaagaggaggcactcctcacctta 255  Q
    ||||||||||||||||||||||||||||||    
T  10453764 gtttataaagaggaggcactcctcacctta 10453735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 47833723 - 47833694
Alignment:
Q  226 gtttataaagaggaggcactcctcacctta 255  Q
    ||||||||||||||||||||||||||||||    
T  47833723 gtttataaagaggaggcactcctcacctta 47833694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 49477366 - 49477399
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||| |||||||||||    
T  49477366 aaaagtttataaagaggaggcaatcctcacctta 49477399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 54369081 - 54369122
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggttt 266  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  54369081 agtttataaagaggaggcactcctcactttacaaaccggttt 54369122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10758880 - 10758844
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa 217  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  10758880 tattggaaaaaactcaagtcccacatcggatagataa 10758844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 14170059 - 14170031
Alignment:
Q  227 tttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||    
T  14170059 tttataaagaggaggcactcctcacctta 14170031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 42637859 - 42637823
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa 217  Q
    |||||| |||||||||| |||||||||||||||||||    
T  42637859 tattgggaaaaactcatatcccacattggatagataa 42637823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 38871222 - 38871175
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  38871222 ataaaagtttataaagaggaggcactcctcaccttaagaaccggtttt 38871175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 38871016 - 38870969
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38871016 ataaaagtttataaagtggaggcactcctcaccttaagaaccggtttt 38870969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 6238065 - 6237988
Alignment:
Q  189 aaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||| |||||| |  | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  6238065 aaaactcatgtcccacatcggatag-tcttgataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 6237988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 22826853 - 22826765
Alignment:
Q  185 ggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||| |||||||||||| ||||||||||      | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  22826853 ggaaaaaacccatgtcccacatcggatagataagactcttgataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 22826765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 6238404 - 6238357
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||    
T  6238404 ataagagtttatatagaggaggcaatcctcaccttatgaaccggtttt 6238357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 10017395 - 10017348
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  10017395 ataagagtttataaagaggaagcactcctcaccttatgaaccgatttt 10017348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 29413385 - 29413432
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||    
T  29413385 ataagagtttataaagaggaggcactcctcaccttatgagccagtttt 29413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 47377827 - 47377922
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa---------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| ||||||||||||||||||| ||||||||||         | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  47377827 tattgggaaaaactcatgtcccacatcggatagataagactcttgataataatagtttatatagaggagacaatcctcaccttatgaaccggtttt 47377922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 35892058 - 35892094
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttat 256  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35892058 ataagagtttataaagaggaggcactcctcaccttat 35892094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 45982371 - 45982415
Alignment:
Q  223 aaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||    
T  45982371 aaagtttataaagaggaggcactcttcactttacgaaccggtttt 45982415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 2697393 - 2697363
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  2697393 agtttataaagaggaggcactcctcacctta 2697363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 4022187 - 4022157
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  4022187 agtttataaagaggaggcactcctcacctta 4022157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 17419829 - 17419859
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  17419829 agtttataaagaggaggcactcctcacctta 17419859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 19937105 - 19937075
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  19937105 agtttataaagaggaggcactcctcacctta 19937075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 20429302 - 20429256
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggttt 266  Q
    |||| ||||||||||||||| |||||| |||||||||||||| ||||    
T  20429302 ataagagtttataaagaggaagcactcatcaccttatgaaccagttt 20429256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 20735797 - 20735827
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  20735797 agtttataaagaggaggcactcctcacctta 20735827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 31305753 - 31305783
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  31305753 agtttataaagaggaggcactcctcacctta 31305783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 36326948 - 36326978
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  36326948 agtttataaagaggaggcactcctcacctta 36326978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 37600914 - 37600956
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||| ||||||||||||||||| | ||||||||    
T  37600914 agtttataaagaggcggcactcctcaccttataagccggtttt 37600956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 38474325 - 38474355
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  38474325 agtttataaagaggaggcactcctcacctta 38474355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 43423321 - 43423351
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  43423321 agtttataaagaggaggcactcctcacctta 43423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 45403482 - 45403512
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  45403482 agtttataaagaggaggcactcctcacctta 45403512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 20735566 - 20735594
Alignment:
Q  227 tttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||    
T  20735566 tttataaagaggaggcactcctcacctta 20735594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 21538994 - 21538954
Alignment:
Q  227 tttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||||||| |||||||||||  ||||||||||    
T  21538994 tttataaagaggaggcaatcctcaccttacaaaccggtttt 21538954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 22892495 - 22892467
Alignment:
Q  225 agtttataaagaggaggcactcctcacct 253  Q
    |||||||||||||||||||||||||||||    
T  22892495 agtttataaagaggaggcactcctcacct 22892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 25999060 - 25999107
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  25999060 ataatagtttataaagaggagacactcctcaccttatgaaccggtttt 25999107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 26098791 - 26098838
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  26098791 ataatagtttataaagaggagacactcctcaccttatgaaccggtttt 26098838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 25998808 - 25998901
Alignment:
Q  180 ctattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  25998808 ctattgggaaaaacccaagtcccacatcggatagataagactcatgataatagtttataaagaggagacactcctcaccttatgaaccgctttt 25998901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 26098333 - 26098426
Alignment:
Q  180 ctattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26098333 ctattgggaaaaacccaagtcccacatcggatagataagactcatgataatagtttataaagaggagacactcctcaccttatgaaccgctttt 26098426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 26098585 - 26098632
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26098585 ataatagtttataaagaggagacactcctcaccttatgaaccgctttt 26098632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 1744904 - 1744874
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  1744904 agtttataaagaggaggcactcctcacctta 1744874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 8144059 - 8144089
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  8144059 agtttataaagaggaggcactcctcacctta 8144089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 10418400 - 10418370
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  10418400 agtttataaagaggaggcactcctcacctta 10418370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 29742500 - 29742468
Alignment:
Q  223 aaagtttataaagaggaggcactcctcacctta 255  Q
    ||||||||||||||||||||| |||||||||||    
T  29742500 aaagtttataaagaggaggcaatcctcacctta 29742468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 43901129 - 43901037
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| |||||||||||| ||||||||||      | |||| |||||||| ||||||| || |||||||||||||||||||||||    
T  43901129 tattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttatatagaggagacaatcctcaccttatgaaccggtttt 43901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 25186562 - 25186608
Alignment:
Q  221 taaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  25186562 taaaagtttatatagaggagacaatcctcaccttatgaaccggtttt 25186608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 39588146 - 39588104
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  39588146 agtttataaagaggaggcactcctcaccttataagccggtttt 39588104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 41456416 - 41456342
Alignment:
Q  196 atgtcccacattggatagataatt---ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||| |||||||||||    |||| |||||||| ||||||| || ||||||||| |||||||||||||    
T  41456416 atgtcccacatcggatagataatcctgataagagtttatatagaggagacaatcctcacctgatgaaccggtttt 41456342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 3895168 - 3895215
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| |||||||||| |||||||||||||||| ||||||    
T  3895168 ataagagtttatatagaggaggcaatcctcaccttatgaactggtttt 3895215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 15968253 - 15968206
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||| ||||||||||  ||||||||||||||||||||||    
T  15968253 ataagagtttatatagaggaggcaaccctcaccttatgaaccggtttt 15968206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 34248114 - 34248149
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  34248114 ataagagtttataaagaggaggcactcctcacctta 34248149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 34248396 - 34248431
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  34248396 ataagagtttataaagaggaggcactcctcacctta 34248431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 36997203 - 36997238
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  36997203 ataagagtttataaagaggaggcactcctcacctta 36997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 18905898 - 18905928
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  18905898 agtttataaagaggaggcactcctcacctta 18905928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 20298578 - 20298548
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  20298578 agtttataaagaggaggcactcctcacctta 20298548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 21085210 - 21085180
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21085210 agtttataaagaggaggcactcctcacctta 21085180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 22188927 - 22189018
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcaccttatgaaccg-gttttaaggataagt 277  Q
    |||||| ||||||||||||||||||| ||||||      |||||||||||||  ||||||||| ||||||||| || ||| |  ||||||||||||||    
T  22188927 tattgggaaaaactcatgtcccacatcggatag------ataaaagtttatattgaggaggcaatcctcacctgataaactgatttttaaggataagt 22189018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 32931443 - 32931473
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  32931443 agtttataaagaggaggcactcctcacctta 32931473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 39587920 - 39587878
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||||| |||||||||||||||| | ||||||||    
T  39587920 agtttataaagaggaagcactcctcaccttataagccggtttt 39587878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 21653843 - 21653876
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacctta 255  Q
    ||||||||||| ||||||||||||||||||||||    
T  21653843 aaaagtttatacagaggaggcactcctcacctta 21653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 41456607 - 41456521
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcaccttatgaaccggttttaaggat 273  Q
    |||||| |||||||||||||||||||| |||||      |||| |||||||| ||||||| || ||||||||| |||| | | ||||||||||    
T  41456607 tattgggaaaaactcatgtcccacattagatag------ataagagtttatatagaggagacagtcctcacctgatgatcggtttttaaggat 41456521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 39268010 - 39268102
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| || ||||||||| ||||||||||      | |||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  39268010 tattgggaaaaacccaagtcccacatcggatagataagactcttgataagagtttataaataggaggcactcctcaccttatgaactggtttt 39268102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 39268218 - 39268310
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| || ||||||||| ||||||||||      | |||| ||||||||||  |||||||||||||||||||||||||||||||    
T  39268218 tattgggaaaaacccaagtcccacatcggatagataaaactcttgataagagtttataaattggaggcactcctcaccttatgaaccggtttt 39268310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 18107877 - 18107917
Alignment:
Q  227 tttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  18107877 tttataaagaggaggcactcctcaccttataaaccggtttt 18107917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 1028155 - 1028113
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||||||||||||||||||||||  ||||||||||    
T  1028155 agtttataaagaggaggcactcctcaccttacaaaccggtttt 1028113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 2716380 - 2716416
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttat 256  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2716380 ataaaagtttataaagaggagacactcctcaccttat 2716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 18873305 - 18873214
Alignment:
Q  182 attggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||| |||| | |||||||||||| ||||||||||      | |||| |||||||| |||||||||| ||||||||||||||||| |||||    
T  18873305 attgggaaaagcccatgtcccacatcggatagataagactattgataagagtttatatagaggaggcaatcctcaccttatgaaccagtttt 18873214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 2716583 - 2716630
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| ||||||||| |||||||||||||||||||||| | ||||||||    
T  2716583 ataagagtttataaggaggaggcactcctcaccttataagccggtttt 2716630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 28156028 - 28156102
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataattataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||||| |||||| || ||||||||| ||||||| ||   | | ||||||||||||||||||| |||||||||||    
T  28156028 tattgggaaaaacccaagtcccacatcggatagacaagactcagagtttataaagaggaggcaatcctcacctta 28156102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 29396408 - 29396378
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacc 252  Q
    |||||||||||||||||||||||||||||||    
T  29396408 aaaagtttataaagaggaggcactcctcacc 29396378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 48376 - 48343
Alignment:
Q  222 aaaagtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||| |||||||||||    
T  48376 aaaagtttataaagaggaggcaatcctcacctta 48343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 39386662 - 39386754
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||| |||||| |||||||||||| ||||||||||      | |||| |||||||| |||||||||| |||||||||||||||| ||||||    
T  39386662 tattgggaaaaacccatgtcccacatcggatagataagactcttgataagagtttatatagaggaggcaatcctcaccttatgaactggtttt 39386754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 27545228 - 27545136
Alignment:
Q  181 tattggaaaaaactcatgtcccacattggatagataa------ttataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    ||||||||||||  |||||||||||| ||||||||||      | | || ||||||||||||||||||| |||||||||||  ||||||||||    
T  27545228 tattggaaaaaatccatgtcccacatcggatagataagactcttgagaagagtttataaagaggaggcaatcctcaccttacaaaccggtttt 27545136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 8044613 - 8044565
Alignment:
Q  220 ataaaagtttataaa-gaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  8044613 ataagagtttataaaagaggaggcactcctcaccttatgaaccagtttt 8044565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 15061329 - 15061297
Alignment:
Q  223 aaagtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||||    
T  15061329 aaagtttataaagaggaggcactcctcacctta 15061297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 22447342 - 22447390
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttta 268  Q
    |||| ||||| ||||||||| ||||||||||||||||||||| ||||||    
T  22447342 ataagagtttttaaagaggacgcactcctcaccttatgaaccagtttta 22447390  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 10849558 - 10849523
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcacctta 255  Q
    |||| |||||||||||||||||||||||||||||||    
T  10849558 ataagagtttataaagaggaggcactcctcacctta 10849523  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 30156250 - 30156304
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggttt--taaggataagt 277  Q
    |||||||||||||||||||||||||||||||  | |||||||  |||||||||||    
T  30156250 agtttataaagaggaggcactcctcaccttacaagccggttttgtaaggataagt 30156304  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 3976533 - 3976503
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  3976533 agtttataaagaggaggcactcctcacctta 3976503  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 10536991 - 10536949
Alignment:
Q  225 agtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||  |||||||||| |||||||||||||||||||||    
T  10536991 agtttataagaaggaggcacttctcaccttatgaaccggtttt 10536949  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 11969094 - 11969124
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  11969094 agtttataaagaggaggcactcctcacctta 11969124  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 17265041 - 17264995
Alignment:
Q  221 taaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  17265041 taaaagtttatatagaggaggcaatcctcacctgatgaaccagtttt 17264995  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 17509151 - 17509181
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  17509151 agtttataaagaggaggcactcctcacctta 17509181  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 21213947 - 21213917
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21213947 agtttataaagaggaggcactcctcacctta 21213917  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 21214263 - 21214233
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  21214263 agtttataaagaggaggcactcctcacctta 21214233  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 23054368 - 23054398
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  23054368 agtttataaagaggaggcactcctcacctta 23054398  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 42768396 - 42768366
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  42768396 agtttataaagaggaggcactcctcacctta 42768366  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 43195826 - 43195856
Alignment:
Q  225 agtttataaagaggaggcactcctcacctta 255  Q
    |||||||||||||||||||||||||||||||    
T  43195826 agtttataaagaggaggcactcctcacctta 43195856  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 43169284 - 43169313
Alignment:
Q  225 agtttataaagaggaggcactcctcacctt 254  Q
    ||||||||||||||||||||||||||||||    
T  43169284 agtttataaagaggaggcactcctcacctt 43169313  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 29676143 - 29676245
Alignment:
Q  180 ctattggaaaaaactcatgtcccacattggatagataa--tt--ataaaagtttataaagaggaggcactcctcaccttatgaaccg-gttttaaggata 274  Q
    ||||||| |||||| ||| |||||||| | ||||||||  ||  ||||||||||||| ||||||| || |||||||||||| ||| |  |||||||||||    
T  29676143 ctattgggaaaaacccatatcccacatcgaatagataagattcgataaaagtttatatagaggagacaatcctcaccttataaacggatttttaaggata 29676242  T
Q  275 agt 277  Q
    |||    
T  29676243 agt 29676245  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 222501 - 222454
Alignment:
Q  220 ataaaagtttataaagaggaggcactcctcaccttatgaaccggtttt 267  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  222501 ataagagtttataaagaggaggcactcttcaccttatgaaccgatttt 222454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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