View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4079_high_3 (Length: 250)

Name: NF4079_high_3
Description: NF4079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4079_high_3
NF4079_high_3
[»] chr4 (2 HSPs)
chr4 (1-240)||(6274258-6274497)
chr4 (63-139)||(6275266-6275343)
[»] chr7 (6 HSPs)
chr7 (102-172)||(23790170-23790240)
chr7 (97-169)||(23853299-23853371)
chr7 (129-172)||(23821140-23821183)
chr7 (132-169)||(23801060-23801097)
chr7 (129-170)||(23805819-23805860)
chr7 (132-172)||(23815693-23815733)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6274497 - 6274258
Alignment:
Q  1 attcttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcacaggaagccagaaagctaagtagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6274497 attcttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcgcaggaagccagaaagctaagtagga 6274398  T
Q  101 agcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatgattcttcaatgcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6274397 agcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatgattcttcaatgcct 6274298  T
Q  201 ttctcacgttcttctttgttcactgtccatgcagcctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6274297 ttctcacgttcttctttgttcactgtccatgcagcctttg 6274258  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 6275343 - 6275266
Alignment:
Q  63 gcttcttcaatcacaggaagccagaaagctaag-taggaagcagcaatgtccacaatgctaatgttttctccaccaaa 139  Q
    ||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||    
T  6275343 gcttcttcaatcacagggagtcagaaagcttaggtaggaagcagcaatgtccacaatactaattttctctccaccaaa 6275266  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 23790170 - 23790240
Alignment:
Q  102 gcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattg 172  Q
    |||| |||||| ||||||| ||| |  ||||||||||||||||||| |||||| |||||||| ||||||||    
T  23790170 gcagtaatgtcaacaatgccaatctcatctccaccaaagaatttgtccttgagctcattctctagaaattg 23790240  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 23853371 - 23853299
Alignment:
Q  97 aggaagcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaa 169  Q
    ||||||||||||| ||||||| |||||| |  ||||| |||||||| |||| ||| || ||||||||||||||    
T  23853371 aggaagcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaa 23853299  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 23821140 - 23821183
Alignment:
Q  129 tctccaccaaagaatttgtgcttgagttcattctcaagaaattg 172  Q
    |||||||||||||| |||| |||||| |||||||||||||||||    
T  23821140 tctccaccaaagaacttgtccttgagctcattctcaagaaattg 23821183  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 23801060 - 23801097
Alignment:
Q  132 ccaccaaagaatttgtgcttgagttcattctcaagaaa 169  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  23801060 ccaccaaagaatttgtccttgagctcattctcaagaaa 23801097  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 23805819 - 23805860
Alignment:
Q  129 tctccaccaaagaatttgtgcttgagttcattctcaagaaat 170  Q
    |||||||||||||||||||  ||||| |||||||||||||||    
T  23805819 tctccaccaaagaatttgtctttgagctcattctcaagaaat 23805860  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 23815693 - 23815733
Alignment:
Q  132 ccaccaaagaatttgtgcttgagttcattctcaagaaattg 172  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  23815693 ccaccaaagaatttgtctttgagctcattctcaagaaattg 23815733  T

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