View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4079_low_4 (Length: 268)
Name: NF4079_low_4
Description: NF4079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4079_low_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 3015578 - 3015329
Alignment:
| Q |
19 |
cttttgatgctctcttgcctcatgaagttgttcagtacctcttctaacaaaagaactagcatgtgcaacatgactctctatgttattcaattgttgtcct |
118 |
Q |
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| T |
3015578 |
cttttgatgctctcttgcctcatgaagttgttcagtacctcttctaacaaaagaactagcatgtgcaacatgactctctatgttattcaattgttgtcct |
3015479 |
T |
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| Q |
119 |
tgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagtttttctctatttccttaacagcatcatgtctttcttgaatctcag |
218 |
Q |
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| T |
3015478 |
tgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagtttttctctatttccttaacagcatcatgtctttcttgaatctcag |
3015379 |
T |
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| Q |
219 |
atattgtgtccataatctgacccctaccttgttcttgaattgctctttgc |
268 |
Q |
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| T |
3015378 |
atattgtgtccataatctgacccctaccttgttcttgaattgctctttgc |
3015329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 35955559 - 35955808
Alignment:
| Q |
19 |
cttttgatgctctcttgcctcatgaagttgttcagtacctcttctaacaaaagaactagcatgtgcaacatgactctctatgttattcaattgttgtcct |
118 |
Q |
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| T |
35955559 |
cttttgttgcactctagcttcctgaagttgttctgtccctcttcttacaaaagaacttgcatgtgcaacatggctctcaatattattaagttgttgtcct |
35955658 |
T |
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| Q |
119 |
tgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagtttttctctatttccttaacagcatcatgtctttcttgaatctcag |
218 |
Q |
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| T |
35955659 |
tgagactctaccaaagttgccatatccaaaaacacttgatgcaactcaatcaaattcttctcaatttccttaacagcatcatgtctttcttgaatttccg |
35955758 |
T |
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| Q |
219 |
atattgtgtccataatctgacccctaccttgttcttgaattgctctttgc |
268 |
Q |
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| T |
35955759 |
aaatagtatccattatttgacccctaccttgttcttgaattgccctttgc |
35955808 |
T |
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