View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4079_low_8 (Length: 229)
Name: NF4079_low_8
Description: NF4079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4079_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 10602302 - 10602497
Alignment:
| Q |
15 |
caaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcacacat |
114 |
Q |
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| T |
10602302 |
caaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcacacat |
10602401 |
T |
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| Q |
115 |
tttatgtggaatgagttgctccttgctaaatgctattgggacagaatgaataccatgaagaatgattcaactttgttcgagtttgaggaggatggc |
210 |
Q |
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| T |
10602402 |
tttatgtggaatgagttgctccttgctaaatgctattgggacagtatgaataccatgaagaatgattcaactttgttcgagtttgaggaggatggc |
10602497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 17007413 - 17007305
Alignment:
| Q |
15 |
caaaggaagggattataaaggtatagctaacatccatatcg---agaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcaca |
111 |
Q |
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| T |
17007413 |
caaaggaagggactataaaggtatagctaacatccctattgtgaagaagaagaaggaatctattgataacaatggtttgaatcaaagcttcaaaagctca |
17007314 |
T |
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| Q |
112 |
cattttatg |
120 |
Q |
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| T |
17007313 |
ctttttatg |
17007305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 16967765 - 16967657
Alignment:
| Q |
16 |
aaaggaagggattataaaggtatagctaacatccatatcgagaaga------agaatgaatctattgataataatggtttgatacaaagcgtcaaaagca |
109 |
Q |
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| T |
16967765 |
aaaggaagggattataaaggtgtagctaacatccctattgagaagaagaagaagaaggaatctattgataacagttgtttgaatcaaagcgtcaaaagcc |
16967666 |
T |
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| Q |
110 |
cacatttta |
118 |
Q |
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||||||||| |
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| T |
16967665 |
cacatttta |
16967657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 16976557 - 16976461
Alignment:
| Q |
21 |
aagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcacacattttatg |
120 |
Q |
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|||||| ||| ||||||||||||| |||| ||| ||||||||| |||||||||||||| ||||||||| ||||||||||||| | ||||||||||| |
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| T |
16976557 |
aagggactatgaaggtatagctaatatccctattgagaagaag---gaatctattgataaccatggtttgaatcaaagcgtcaaaaacccacattttatg |
16976461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 16991901 - 16991798
Alignment:
| Q |
15 |
caaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcacacat |
114 |
Q |
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|||| |||||||||||||||||| |||| ||||| || | ||||||| ||||| | |||||| ||||| |||| ||||||||||||||||||||| |
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| T |
16991901 |
caaaagaagggattataaaggtagagctgacatctgtaatggtgagaagaaggaatcaactgataacaatggattgaatcaaagcgtcaaaagcacacat |
16991802 |
T |
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| Q |
115 |
ttta |
118 |
Q |
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|||| |
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| T |
16991801 |
ttta |
16991798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 16967630 - 16967579
Alignment:
| Q |
133 |
ctccttgctaaatgctattgggacagaatgaataccatgaagaatgattcaa |
184 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||| || ||||||| |
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| T |
16967630 |
ctccttgctcaatgctattgggaaagaaagaataccatgaacaaagattcaa |
16967579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 16976436 - 16976385
Alignment:
| Q |
133 |
ctccttgctaaatgctattgggacagaatgaataccatgaagaatgattcaa |
184 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||| || ||||||| |
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| T |
16976436 |
ctccttgctcaatgctattgggaaagaaagaataccatgaacaaagattcaa |
16976385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 16976641 - 16976594
Alignment:
| Q |
15 |
caaaggaagggattataaaggtatagctaacatccatatcgagaagaa |
62 |
Q |
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|||||||||||| |||||||||||| ||||||||| ||| |||||||| |
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| T |
16976641 |
caaaggaagggactataaaggtataactaacatccctattgagaagaa |
16976594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 35263477 - 35263658
Alignment:
| Q |
15 |
caaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaagcgtcaaaagcacacat |
114 |
Q |
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|||| |||||||||||||||||| |||||||||| || | ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
35263477 |
caaaagaagggattataaaggtagagctaacatctgtaatggtgagaagaaggaatctattgataccaatggtttgaatcaaagcgtcaaaagcacacat |
35263576 |
T |
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| Q |
115 |
tttatgtggaatgagttg------------ctccttgctaaatgctattgggacagaatgaataccatgaagaatgattcaa |
184 |
Q |
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|||| | |||| |||||| ||||||| ||||||||||||||| |||| ||||||||| || |||||||||| |
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| T |
35263577 |
tttacgcggaaggagttgcgttcactcgaactccttgttaaatgctattgggaaagaaagaataccattaacaatgattcaa |
35263658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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