View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4080_high_2 (Length: 520)
Name: NF4080_high_2
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4080_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 4863654 - 4864143
Alignment:
| Q |
11 |
cacagatattggagtatagaaaaccctagaagcagaatacaaaccctaaaattttatttnnnnnnnnnnnngaatacaaaccctaaattcccattgtcaa |
110 |
Q |
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| T |
4863654 |
cacagatattggagtatagaaaaccctagaagcagaatacaaaccctaaaattttatttaaaaaacaaaaggaatacaaaccctaaattcccattgtcaa |
4863753 |
T |
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| Q |
111 |
ttgagaaaatataaatttctagtgtaagaataatttattggttaaaaaattgtgagaataatttaaccagagaggataccttctctttagtgcactcatt |
210 |
Q |
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| T |
4863754 |
ttgagaaaatataaatttctagagtaagaataatttattggttaaaaatttgtgagaataatttaaccagagaggataccttctctttagtgcactcatt |
4863853 |
T |
|
| Q |
211 |
ctctccttctctttctctctcctatcattcaagacataattatatgtcctaattagatactccctcaggtgtcttactttatgccaattttgggccaatt |
310 |
Q |
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| T |
4863854 |
ctctccttctctttctctctcctatcattcaagacataattatatttcctaattaaatactccctcaggtgccttactttatgccaattttgggccaatt |
4863953 |
T |
|
| Q |
311 |
tctgattctccaagatttcttgtgctccccatggttgtgaccttgagatgtaagctatataccgttgcgttgcatgtgagattttatacaaatttacgta |
410 |
Q |
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| T |
4863954 |
tctgattctccaagatttcttgtgctccccatggttgtgaccttgatatgtaagctatatac-----cgttgcatgtaagattttatacaaatttacgta |
4864048 |
T |
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| Q |
411 |
gaacctaaaatgtactttggatttcttgaatttattttttaaactaacaaatacatgttttatttaataactcagtgcttctttaagaccattgt |
505 |
Q |
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| T |
4864049 |
gaacctaaaatgtaatttggatttcttgaatttattttttaaactaacaaatacatgttttatttaataactcagtgcttctttaagaccattgt |
4864143 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 35815578 - 35815618
Alignment:
| Q |
309 |
tttctgattctccaagatttcttgtgctccccatggttgtg |
349 |
Q |
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| T |
35815578 |
tttctgattctccgagatttcttttgctccccatggatgtg |
35815618 |
T |
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