View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4080_low_1 (Length: 550)
Name: NF4080_low_1
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4080_low_1 |
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| [»] scaffold0596 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 385
Target Start/End: Complemental strand, 7472053 - 7471702
Alignment:
| Q |
40 |
atgtgtgaaacaccatgtaagagacggggatgaatgaaacacttttnnnnnnncgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
139 |
Q |
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| T |
7472053 |
atgtgtgaaacaccatgtaagagacggggacgaatgaaacacttttaaaaaaacgtgttctttttaacacgagaagtgaatgcaaatacatggatagagc |
7471954 |
T |
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| Q |
140 |
cgctcgaaatcccaatacttccaaattttatacaaatgtaacataaaatgaaaa-gagaagaatagaggcaat------gtgatttcattaagaaaaaca |
232 |
Q |
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| T |
7471953 |
cgctcgaaattccaatacttccaatttttataaaaatgtaacataaaatgaaaaagagaaga-tggaaatgattttgttgtgatttcattaagaaaaata |
7471855 |
T |
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| Q |
233 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattcttacacgattgtta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7471854 |
gaggcaatgtatatacaaatacatatctctaattttatggttatgctcctataactcaacaatctattcctacaatcaaactattcttatacgattgtta |
7471755 |
T |
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| Q |
333 |
ccatatttacggcatgaatcatggaatatacttggctttcctaatactccccc |
385 |
Q |
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| T |
7471754 |
ccatatttacggcatgaatcatggaatatacttggctttccttatacttcccc |
7471702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 9913 - 9802
Alignment:
| Q |
418 |
cttgttttgctgaaggaatatactcatttgcaactgaaccatcttaaactttgtcataaataaaatgacaatttatctttatatgacgtgttctttcata |
517 |
Q |
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|||||| ||||||||||| ||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| |||| |||||| || |||||||||| |
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| T |
9913 |
cttgttctgctgaaggaacatactcagttgcaattgaaccatcttgaattttatcacgaataaaatgacaatcaatctctatatgtcgagttctttcatg |
9814 |
T |
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| Q |
518 |
aaatactggatt |
529 |
Q |
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| T |
9813 |
aaataccggatt |
9802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 5682 - 5599
Alignment:
| Q |
236 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
319 |
Q |
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| T |
5682 |
gcaatatatacacagatacatatctctaatgtgatgattatgctgttataactcagcaatatattcctacaatcaagctattct |
5599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 47752892 - 47752781
Alignment:
| Q |
418 |
cttgttttgctgaaggaatatactcatttgcaactgaaccatcttaaactttgtcataaataaaatgacaatttatctttatatgacgtgttctttcata |
517 |
Q |
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|||||| ||||||||||| ||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| |||| |||||| || |||||||||| |
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| T |
47752892 |
cttgttctgctgaaggaacatactcagttgcaattgaaccatcttgaattttatcacgaataaaatgacaatcaatctctatatgtcgagttctttcatg |
47752793 |
T |
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| Q |
518 |
aaatactggatt |
529 |
Q |
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|||||| ||||| |
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| T |
47752792 |
aaataccggatt |
47752781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 47753178 - 47753095
Alignment:
| Q |
236 |
gcaatgtatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
319 |
Q |
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| T |
47753178 |
gcaatatatacacatatacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
47753095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 19665838 - 19665915
Alignment:
| Q |
242 |
tatatacaaatacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
319 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||| |||| |||| ||||||||||||| |||||| ||||||| |
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| T |
19665838 |
tatacacaaatacatatctctaatttgatgattatgcttctatagctcatcaatctattcctataatcaagctattct |
19665915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 534
Target Start/End: Original strand, 19666118 - 19666234
Alignment:
| Q |
418 |
cttgttttgctgaaggaatatactcatttgcaactgaaccatcttaaactttgtcataaataaaatgacaatttatctttatatgacgtgttctttcata |
517 |
Q |
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|||||| |||| | |||| ||||||| |||||| | ||||||||| || ||||||| |||||||||||||| ||||| |||| || |||||||||| |
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| T |
19666118 |
cttgttatgcttatggaacatactcagttgcaaataaaccatcttgaattttgtcacgaataaaatgacaatctatctcggtatgtcgagttctttcatg |
19666217 |
T |
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| Q |
518 |
aaatactggattagatg |
534 |
Q |
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||||| |||||||||| |
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| T |
19666218 |
aaatatcggattagatg |
19666234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 19665988 - 19666062
Alignment:
| Q |
348 |
gaatcatggaatatacttggctttcctaatactccccc-caagttagtgagtggatatcaagaactcccagcttg |
421 |
Q |
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||||||| ||||||| ||| ||||||||| ||||||| |||||||| |||||||||| ||||||||||| |||| |
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| T |
19665988 |
gaatcatagaatataattgactttcctaacactccccgtcaagttagagagtggatattaagaactcccaacttg |
19666062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 39037169 - 39037237
Alignment:
| Q |
251 |
atacatatctctaattttatggttatgctcatataactcaacaatctattcctacaatcaaactattct |
319 |
Q |
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||||||||||||||| | || ||||||| ||||||||| |||| ||||||||||||||| ||||||| |
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| T |
39037169 |
atacatatctctaatgtgttgattatgctgttataactcagcaatatattcctacaatcaagctattct |
39037237 |
T |
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