View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4080_low_3 (Length: 363)
Name: NF4080_low_3
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4080_low_3 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 28096553 - 28096216
Alignment:
| Q |
16 |
caagttacgcaaaagttgccctacgtcatttaaggtggataactcgattgataaacctattgtatacaaaagcattaccttcttctgactattgnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096553 |
caagttacgcaaaagttgccctacgtcatttaaggtggataactcgatcgataaacctattgtatacaaaagcattaccttcttctgactattgtttttt |
28096454 |
T |
|
| Q |
116 |
nnnnnnnnnnnngcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaattta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096453 |
ttcttcttttttgcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaattta |
28096354 |
T |
|
| Q |
216 |
taagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtagga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28096353 |
gaagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtagga |
28096254 |
T |
|
| Q |
316 |
agctcaagagttttccacccattcaattgacctctctg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28096253 |
agctcaagagttttccacccattcaattgacctctctg |
28096216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 352
Target Start/End: Complemental strand, 26341453 - 26341229
Alignment:
| Q |
128 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
227 |
Q |
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|||||||||| | | | |||||||||||| ||||||| ||| | | | ||| ||||||||| ||| ||||| |||||||||||||| ||||||||||| |
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| T |
26341453 |
gcagatgttctttggtatgaaagttttacgtttagacaagtctgcatatttaacagaaataagcgacatatctagtctccaaaatttagaagaattttca |
26341354 |
T |
|
| Q |
228 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
327 |
Q |
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||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| || || || ||||||||||| | ||| | |||| |
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| T |
26341353 |
tttggaaggtgtaagaatgtactcgcaattcatgattctattgggttcttgaataaacttaaaattttgaacgccgaaggttgtagcaggcttagaagtt |
26341254 |
T |
|
| Q |
328 |
ttccacccattcaattgacctctct |
352 |
Q |
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||||||| ||| | ||||| ||||| |
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| T |
26341253 |
ttccaccaattaagttgacttctct |
26341229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 295
Target Start/End: Original strand, 28151425 - 28151592
Alignment:
| Q |
128 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
227 |
Q |
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|||||||||||| | | ||| ||||||| ||||||||| | |||| || ||| |||||||| |||| ||||||||||||||||||| | ||||||||| |
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| T |
28151425 |
gcagatgttcataggtatgacagttttaggtttagacgattctaaatgtttaacagaaataactgacatatctggtctccaaaatttgaaggaattttca |
28151524 |
T |
|
| Q |
228 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatctt |
295 |
Q |
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||| |||| ||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28151525 |
tttgaaagatgtaataatctacttacgattcatgattctattgggttcctgaataagcttaaaatctt |
28151592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 335
Target Start/End: Original strand, 29828234 - 29828377
Alignment:
| Q |
192 |
gacgtatctggtctccaaaatttataagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaa |
291 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||| || ||| |||| ||| |||||||||||||||||||| ||||| ||||| || |||| |
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| T |
29828234 |
gacgtatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaa |
29828333 |
T |
|
| Q |
292 |
tcttaaatgcggaaggttgtaggaagctcaagagttttccaccc |
335 |
Q |
| |
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| T |
29828334 |
tattggatgcttatggttgcagcaatctaaagagttttccaccc |
29828377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 27216755 - 27216805
Alignment:
| Q |
251 |
tacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgc |
301 |
Q |
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||||||||||||||||||||||||||| | | ||||| ||||||| ||||| |
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| T |
27216755 |
tacaattcatgattctattgggttcctaagtcaacttcaaatcttgaatgc |
27216805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 334
Target Start/End: Original strand, 28190626 - 28190739
Alignment:
| Q |
221 |
attttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctc |
320 |
Q |
| |
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||||||||||||| ||||||||| ||| | |||||| | ||| |||||||||| ||||||||| || |||| || || |||||||| || ||||| |
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| T |
28190626 |
attttcatttcaacagtgtaagaatttaattgaaattcacaaatctgttgggttcctaaataaacttgaagtcttgaacgctgaaggttgcagcaagctt |
28190725 |
T |
|
| Q |
321 |
aagagttttccacc |
334 |
Q |
| |
|
| |||||||||||| |
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| T |
28190726 |
atgagttttccacc |
28190739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 352
Target Start/End: Original strand, 3281888 - 3282112
Alignment:
| Q |
128 |
gcagatgttcatggttttgaaagttttacatttagacgagtgtaaacgtctaagagaaataagtgacgtatctggtctccaaaatttataagaattttca |
227 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| ||||| | | ||| |||||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
3281888 |
gcagatgttcttgggtatgaaagttttacatttagacaagtgttacaggttaacagaaataagtgatgtatctagtctccaaaatttagaagaattttca |
3281987 |
T |
|
| Q |
228 |
tttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagtt |
327 |
Q |
| |
|
||| | |||||| ||| |||| ||||||||||||||| |||||| |||||| |||||||||||||| || || ||||||||||| || |||||||||| |
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| T |
3281988 |
tttagatggtgtaggaatttactcacaattcatgattctgttgggtgcctgaaaaaacttaaaatcttgaaagctgaaggttgtagtaatctcaagagtt |
3282087 |
T |
|
| Q |
328 |
ttccacccattcaattgacctctct |
352 |
Q |
| |
|
||||||| ||||||||||| ||||| |
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| T |
3282088 |
ttccaccaattcaattgacatctct |
3282112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 17991091 - 17991011
Alignment:
| Q |
251 |
tacaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttcc |
331 |
Q |
| |
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||||||||| ||||| ||||||| ||| ||||||||| ||||||||||||| | |||||||| |||||| |||||||||| |
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| T |
17991091 |
tacaattcacgattcgattgggtacctaaataaacttgaaatcttaaatgcacagggttgtagcaagctcgagagttttcc |
17991011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 26138172 - 26138323
Alignment:
| Q |
201 |
ggtctccaaaatttataagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaatcttaaatg |
300 |
Q |
| |
|
||||| ||||||||| || | || |||||| ||| ||||| || ||| ||||||||| |||| ||||||||||| ||||||||| ||| |||||||| |
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| T |
26138172 |
ggtcttcaaaatttagaaaagttctcatttgaaaattgtaacaatttaattacaattcacaattcaattgggttcctaaataaacttgaaaccttaaatg |
26138271 |
T |
|
| Q |
301 |
cggaaggttgtaggaagctcaagagttttccacccattcaattgacctctct |
352 |
Q |
| |
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| | ||||| | |||||| |||||||||||||| | || ||||||||||| |
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| T |
26138272 |
caaagggttgcatcaagctcgagagttttccacccttacagttgacctctct |
26138323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 28130595 - 28130516
Alignment:
| Q |
252 |
acaattcatgattctattgggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttcc |
331 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||| || |||||||||| | ||||| ||||||||||||| |||||| |
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|
| T |
28130595 |
acaattcacaattctattgggtacctaaataaacttgaagtcttaaatgcaaagggttgcaggaagctcaagaattttcc |
28130516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 56141 - 56077
Alignment:
| Q |
270 |
gggttcctgaataaacttaaaatcttaaatgcggaaggttgtaggaagctcaagagttttccacc |
334 |
Q |
| |
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|||||||| ||||||||| ||||||| || ||||||||||| || ||||||| |||||| ||||| |
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|
| T |
56141 |
gggttcctaaataaacttgaaatcttgaacgcggaaggttgcagcaagctcacgagtttcccacc |
56077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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