View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4080_low_4 (Length: 360)

Name: NF4080_low_4
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4080_low_4
NF4080_low_4
[»] chr6 (10 HSPs)
chr6 (11-345)||(27878624-27878957)
chr6 (96-345)||(27873990-27874236)
chr6 (96-345)||(1234772-1235018)
chr6 (96-345)||(26976131-26976377)
chr6 (95-319)||(30986603-30986830)
chr6 (96-283)||(18968007-18968194)
chr6 (11-147)||(30967674-30967810)
chr6 (142-319)||(30966747-30966923)
chr6 (101-288)||(21966677-21966860)
chr6 (11-265)||(23012415-23012667)
[»] chr4 (15 HSPs)
chr4 (11-345)||(30950098-30950430)
chr4 (11-345)||(42265974-42266305)
chr4 (11-345)||(48701736-48702067)
chr4 (95-345)||(30945476-30945724)
chr4 (102-345)||(24520031-24520271)
chr4 (94-345)||(42270693-42270941)
chr4 (96-345)||(48697131-48697378)
chr4 (96-327)||(10427368-10427597)
chr4 (109-305)||(48782850-48783031)
chr4 (221-329)||(1979269-1979375)
chr4 (107-175)||(30165900-30165968)
chr4 (162-202)||(1979565-1979604)
chr4 (83-137)||(21515462-21515516)
chr4 (75-116)||(1999189-1999230)
chr4 (98-175)||(36615361-36615438)
[»] chr3 (10 HSPs)
chr3 (11-345)||(5823190-5823521)
chr3 (11-319)||(2817178-2817486)
chr3 (96-345)||(5818513-5818759)
chr3 (96-345)||(54545953-54546200)
chr3 (104-200)||(4579264-4579360)
chr3 (96-250)||(24659136-24659287)
chr3 (110-267)||(31204781-31204936)
chr3 (84-140)||(25877086-25877142)
chr3 (234-292)||(35977103-35977161)
chr3 (250-327)||(24671173-24671248)
[»] chr8 (3 HSPs)
chr8 (11-345)||(9444007-9444338)
chr8 (96-345)||(9439372-9439618)
chr8 (113-169)||(4799315-4799371)
[»] chr5 (6 HSPs)
chr5 (11-345)||(41718481-41718812)
chr5 (96-345)||(41723207-41723453)
chr5 (96-344)||(34360028-34360273)
chr5 (96-319)||(29585300-29585522)
chr5 (115-344)||(34352320-34352546)
chr5 (72-140)||(23319392-23319458)
[»] chr2 (13 HSPs)
chr2 (11-260)||(825632-825881)
chr2 (105-345)||(5198664-5198901)
chr2 (18-319)||(15602972-15603272)
chr2 (96-260)||(830288-830452)
chr2 (103-327)||(28715849-28716070)
chr2 (105-283)||(30396920-30397096)
chr2 (18-317)||(13843719-13844014)
chr2 (96-200)||(31592910-31593014)
chr2 (226-325)||(8004161-8004259)
chr2 (116-176)||(12175768-12175828)
chr2 (310-345)||(825600-825635)
chr2 (310-345)||(830256-830291)
chr2 (96-319)||(13840240-13840456)
[»] chr7 (7 HSPs)
chr7 (101-327)||(16183636-16183860)
chr7 (96-345)||(30235090-30235339)
chr7 (72-319)||(8139940-8140183)
chr7 (16-283)||(8138384-8138645)
chr7 (11-99)||(25441073-25441161)
chr7 (96-200)||(36528415-36528518)
chr7 (109-255)||(5102606-5102749)
[»] scaffold0074 (1 HSPs)
scaffold0074 (96-327)||(27226-27455)
[»] chr1 (4 HSPs)
chr1 (96-327)||(4130173-4130401)
chr1 (96-327)||(46191319-46191546)
chr1 (101-283)||(30697120-30697300)
chr1 (96-200)||(364683-364786)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 27878624 - 27878957
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
27878624 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagag 27878723  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
27878724 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 27878822  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
27878823 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 27878922  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||||||||||||||    
27878923 ggagaatacaaacactaacactacctaggagaaac 27878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 27873990 - 27874236
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
27874090 aataaagggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac 27874188  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||||||||||||||  |||||||| | |||||||||||    
27874189 tctctcttataaataggagaatacaa--actaacacaaactaggagaaac 27874236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 1235018 - 1234772
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
1234918 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 1234820  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
1234819 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 1234772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 26976131 - 26976377
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26976231 aataa-ggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 26976329  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
26976330 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 26976377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 95 - 319
Target Start/End: Complemental strand, 30986830 - 30986603
Alignment:
95 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc 191  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||||||    
30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc 30986732  T
192 aacaaataaagggnnnnnnn-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatt 290  Q
    ||||||||| |          ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||    
30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt 30986632  T
291 accactctctcttataaataggagaatac 319  Q
    ||||||||||||| ||||||| |||||||    
30986631 accactctctcttgtaaatagaagaatac 30986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 18968194 - 18968007
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagag 283  Q
    ||| |||||       |||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
18968094 aat-aaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag 18968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
30967810 cacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagag 30967711  T
111 taacaaaatattatcacgcaactaaaataagagacga 147  Q
    |||||||||||||||| ||| ||||||||||||||||    
30967710 taacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 142 - 319
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
142 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcacta 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||         |||||||||||||||||||||||||||||    
30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
242 agtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 319  Q
    ||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||    
30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac 30966747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
101 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    ||||||| |||||| ||| ||||||||||| ||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
201 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 288  Q
    ||||        || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
21966762 agggaaaaat--catggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 23012415 - 23012667
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||| ||||||||||| |||||||||||||| |||| |||| |    | |||| |||| |||||| |||| |||||  ||  || |||| |||| || ||    
23012415 cacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaag 23012514  T
111 taacaaaa-tattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn 208  Q
    ||| |||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| |||||        
23012515 taaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggg-gaa 23012611  T
209 nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 265  Q
       |||  |||||||||||||||||||||||||||||  ||||||| || |||||||    
23012612 aaacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 30950098 - 30950430
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
30950098 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagag 30950197  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          
30950198 taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaaaa 30950295  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||    
30950296 accacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaata 30950395  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||||||||||||||    
30950396 ggagaatacaaacactaacactacctaggagaaac 30950430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 42266305 - 42265974
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
42266305 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagag 42266206  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
42266205 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 42266107  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
42266106 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 42266007  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||  |||||||| | |||||||||||    
42266006 ggagaatacaa--actaacacaaactaggagaaac 42265974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 48701736 - 48702067
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
48701736 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 48701835  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
48701836 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 48701934  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
48701935 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata 48702034  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||| |  |||||||| | |||||||||||    
48702035 ggagaatacta--actaacacaaactaggagaaac 48702067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 95 - 345
Target Start/End: Original strand, 30945476 - 30945724
Alignment:
95 ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 194  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
195 aaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca 294  Q
    ||||||  ||        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
30945576 aaataa--gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattacca 30945673  T
295 ctctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
30945674 ctctctcttataaataggagaatacaaacactaacactacctaggagaaac 30945724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 102 - 345
Target Start/End: Original strand, 24520031 - 24520271
Alignment:
102 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- 24520129  T
202 gggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc 301  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24520130 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc 24520229  T
302 ttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||| |  |||||||| | |||||||||||    
24520230 ttataaataggagaatacta--actaacacaaactaggagaaac 24520271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 42270941 - 42270693
Alignment:
94 actgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 193  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
194 caaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc 293  Q
    ||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
42270841 caaataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 42270743  T
294 actctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||||||||||||||||  |||||||| | |||||||||||    
42270742 actctctcttataaataggagaatacaa--actaacacaaactaggagaaac 42270693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 48697131 - 48697378
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 48697330  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
48697331 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 48697378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 10427597 - 10427368
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 294  Q
    ||| |||||       | |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||   |||||||     
10427497 aat-aaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc- 10427400  T
295 ctctctcttataaataggagaatacaaacacta 327  Q
    |||||||||  |||||||||||||| |||||||    
10427399 ctctctctt-gaaataggagaatactaacacta 10427368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
109 agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn 208  Q
    |||| |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||||        
48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T
209 nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat 305  Q
        || |||         |||||||||||||||||||||||||||| | ||||||||||||| |||| |  |||||||||||||||||||||||||    
48782932 a---catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 329
Target Start/End: Complemental strand, 1979375 - 1979269
Alignment:
221 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaataca 320  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  || | ||||||| ||| | |||||||||||||||||||| ||||||||||     
1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatact 1979278  T
321 aacactaac 329  Q
    | |||||||    
1979277 agcactaac 1979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
107 agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 175  Q
    |||||||||||||| |||||| |||||||||||||| | ||||||| | ||| |||||||| |||||||    
30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 1979604 - 1979565
Alignment:
162 aacacacaatattttacgtggaaacccctcaacaaataaag 202  Q
    |||||||||||||| ||||||||||||||||||||||||||    
1979604 aacacacaatattt-acgtggaaacccctcaacaaataaag 1979565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 21515462 - 21515516
Alignment:
83 gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaa 137  Q
    |||||||||||| |||| |||| |||||||||||| |||| |||| |||||||||    
21515462 gctctgataccattgttgggtatcagagtaacaaagtattttcacacaactaaaa 21515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
75 aaccaagggctctgataccactgttaggtaccagagtaacaa 116  Q
    ||||||| |||||||||||||||||||||| |||| ||||||    
1999230 aaccaagtgctctgataccactgttaggtatcagaataacaa 1999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
98 ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt 175  Q
    |||||||| ||||||| ||||||||||| | ||  |||||||||| | |||||||||| ||| ||||| ||| |||||    
36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 5823190 - 5823521
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
5823190 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 5823289  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
5823290 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 5823388  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5823389 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 5823488  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||| |  |||||||| | |||||||||||    
5823489 ggagaatacta--actaacacaaactaggagaaac 5823521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 2817178 - 2817486
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| ||||||||||||||||||||||||    
2817178 cacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagag 2817277  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          
2817278 taacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaaaa 2817375  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca--ctctctcttataaa 308  Q
     |||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||||  ||||||||||||||    
2817376 accacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaa 2817475  T
309 taggagaatac 319  Q
    |||||||||||    
2817476 taggagaatac 2817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 5818513 - 5818759
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5818613 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 5818711  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
5818712 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 5818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 54546200 - 54545953
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
54546101 aataa-ggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccac 54546003  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
54546002 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 54545953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 4579360 - 4579264
Alignment:
104 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 4579264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    ||| |||||       |||||||||||||||  ||||||||||||||||||||||    
24659236 aat-aaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 31204781 - 31204936
Alignment:
110 gtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnn 209  Q
    |||||||||||||| ||||||  ||||| |||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |         
31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaat-aagaggaaaa 31204877  T
210 nnccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctct 267  Q
       ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||||||||    
31204878 aatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctct 31204936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
84 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa 140  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
234 tttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattac 292  Q
    ||||||||||||||| |||||||| ||| ||||||||| ||||||||||| ||||||||    
35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 24671173 - 24671248
Alignment:
250 aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacacta 327  Q
    |||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||    
24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaacacta 24671248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 9444007 - 9444338
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
9444007 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 9444106  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
9444107 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 9444205  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
9444206 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata 9444305  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||| |  |||||||| | |||||||||||    
9444306 ggagaatacta--actaacacaaactaggagaaac 9444338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 9439372 - 9439618
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
9439472 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 9439570  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
9439571 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 9439618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
113 acaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacaca 169  Q
    ||||||||||||||| |  ||||||||||||| |||||||||| || ||||||||||    
4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 41718812 - 41718481
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
41718812 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 41718713  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
41718712 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa 41718614  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
41718613 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata 41718514  T
311 ggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||| |  |||||||| | |||||||||||    
41718513 ggagaatacta--actaacacaaactaggagaaac 41718481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 41723453 - 41723207
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
41723353 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac 41723255  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||| |  |||||||| | |||||||||||    
41723254 tctctcttataaataggagaatacta--actaacacaaactaggagaaac 41723207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 344
Target Start/End: Complemental strand, 34360273 - 34360028
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34360173 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 34360075  T
296 tctctcttataaataggagaatacaaacactaacactacctaggagaaa 344  Q
    |||||||||||||||||||||||| |  |||||||| | ||||||||||    
34360074 tctctcttataaataggagaatacta--actaacacaaactaggagaaa 34360028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 29585300 - 29585522
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    ||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
29585400 aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccac 29585498  T
296 tctctcttataaataggagaatac 319  Q
    ||||||||||||||||||||||||    
29585499 tctctcttataaataggagaatac 29585522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 115 - 344
Target Start/End: Complemental strand, 34352546 - 34352320
Alignment:
115 aaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnncca 214  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||    
34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaaacca 34352448  T
215 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34352447 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag 34352348  T
315 aatacaaacactaacactacctaggagaaa 344  Q
    ||||| |  |||||||| | ||||||||||    
34352347 aatacta--actaacacaaactaggagaaa 34352320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 23319392 - 23319458
Alignment:
72 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa 140  Q
    |||||||||  |||||||||||||||||||||| || | ||||  |||||||| || ||||||||||||    
23319392 acgaaccaaaagctctgataccactgttaggtatcataataac--aatattattacacaactaaaataa 23319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 825881 - 825632
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
825881 cacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 825782  T
111 taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||          
825781 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa 825682  T
211 nccacggggcaagagtagagaactttcactaagtggaagaaattacagga 260  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
825681 accacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 105 - 345
Target Start/End: Original strand, 5198664 - 5198901
Alignment:
105 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 204  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggg 5198762  T
205 nnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctctta 304  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
5198763 gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctta 5198862  T
305 taaataggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||| |  |||||||| | |||||||||||    
5198863 taaataggagaatacta--actaacacaaactaggagaaac 5198901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 15603272 - 15602972
Alignment:
18 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa 117  Q
    ||||||||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| ||||||| |||   ||||||| |||    
15603272 catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa 15603173  T
118 atattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacgg 217  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||||||    
15603172 atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaaaccacgg 15603074  T
218 ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 317  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| |||||||||||||    
15603073 ggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaat 15602974  T
318 ac 319  Q
    ||    
15602973 ac 15602972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga 260  Q
    ||||| |||       ||||||||||||||| |||||||||||||||||||||||||||||||||    
830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 327
Target Start/End: Complemental strand, 28716070 - 28715849
Alignment:
103 taccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaag 202  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  |||||| |    
28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
203 ggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 302  Q
    ||       ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||  | ||     
28715971 ggaaaaa--ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcc 28715874  T
303 tataaataggagaatacaaacacta 327  Q
    ||||||||||||||||| |||||||    
28715873 tataaataggagaatactaacacta 28715849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 30396920 - 30397096
Alignment:
105 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg 204  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaat-aaggg 30397016  T
205 nnnnnnnccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaactacaaggagag 283  Q
            ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||  |||||||||||    
30397017 aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 13843719 - 13844014
Alignment:
18 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa 117  Q
    |||||||| ||||||||||||||||||| |||||   ||||||||| |||    |||| |||| |||||| ||||||||  | | || |||||||| |||    
13843719 catactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaa 13843818  T
118 atattatcacgcaactaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacg 216  Q
    ||||||||||| || |||| ||||    ||||||| || ||  ||||||||  |||||| |||||||||||||||||||||||| | |         |      
13843819 atattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggagaaaaattata-- 13843913  T
217 gggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaa 316  Q
    ||  || |||| |||| ||||| ||||||||||||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| |||||||||||    
13843914 ggttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaa 13844013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 31592910 - 31593014
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||| || ||||||| ||||||||||| ||  || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
196 aataa 200  Q
    |||||    
31593010 aataa 31593014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 8004259 - 8004161
Alignment:
226 tagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 325  Q
    |||| |||||||||| | |||||||||||| |  |||||||| ||| |  ||| ||||||||||||| |||||||||||||||||||||||||| |||||    
8004259 tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatactaacac 8004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
116 aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatatttt 176  Q
    ||||||||||||||||||||||||| ||| || |||| || || |||||||||||||||||    
12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt 12175828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 825635 - 825600
Alignment:
310 aggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||||||||||||||||||||||||    
825635 aggagaatacaaacactaacactacctaggagaaac 825600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 830291 - 830256
Alignment:
310 aggagaatacaaacactaacactacctaggagaaac 345  Q
    ||||||||||||||||||||||||||||||||||||    
830291 aggagaatacaaacactaacactacctaggagaaac 830256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| ||||||||| |||||||||||||||||| || || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  ||||||||    
13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca 13840336  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac 295  Q
    || || |||        || || ||||||||||| || ||| || ||||  || ||||||||  |||||||||||| || ||||||||||||||||| |     
13840337 aacaagggggaaaa---catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaat 13840432  T
296 tctctcttataaataggagaatac 319  Q
    ||||||||| |||||  |||||||    
13840433 tctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 16183636 - 16183860
Alignment:
101 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-a 16183734  T
201 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattaccactctc 299  Q
    ||||       ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||   ||||||| |||||    
16183735 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc 16183833  T
300 tcttataaataggagaatacaaacacta 327  Q
    ||||  |||||||||||||| |||||||    
16183834 tctt-gaaataggagaatactaacacta 16183860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 30235339 - 30235090
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||||||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||     
30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg 30235241  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taactacaaggagagtacaattacca 294  Q
    ||||| |||       |||||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||    
30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca 30235141  T
295 ctctctcttataaataggagaatacaaacactaacactacctaggagaaac 345  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
30235140 ctctctcttataaataggagaatacaaacactaacactacgtaagagaaac 30235090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 319
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
72 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaat 171  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||| ||||||    
8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
172 attttacgtggaaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaa 271  Q
    | |||| |||||||||||||||||||| |||||       ||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |    
8140040 a-tttatgtggaaacccctcaacaaat-aaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctctta 8140137  T
272 ctacaaggagagtacaattaccactctctcttataaataggagaatac 319  Q
     |||||||||||   ||||||| |||||||||  ||||||||||||||    
8140138 atacaaggagagacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
16 agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaaca 115  Q
    ||||||||||||||||||||||||||| || ||||     | || |||||||  | ||||||||| |||||| ||||||||||| |||| ||||||| ||    
8138384 agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca 8138479  T
116 aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccac 215  Q
    || |||||||||||| |||||||||||||||||||||||  |||| |||||||| ||  ||| |||||||||||| ||||||  |||||       ||||    
8138480 aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaacaaa-caaggggagaaaaccac 8138577  T
216 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag 283  Q
    | ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||    
8138578 gaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 25441161 - 25441073
Alignment:
11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
25441161 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 36528415 - 36528518
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||| |||||||||||| ||  || ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
196 aataa 200  Q
    |||||    
36528514 aataa 36528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
109 agtaacaaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnn 207  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||| |||       
5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg--a 5102701  T
208 nnnnccacggggcaagagtagagaactttcactaagtggaagaaatta 255  Q
        ||| || ||||||||||| |||||| ||||||||| ||||||||    
5102702 aaaaccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 96 - 327
Target Start/End: Original strand, 27226 - 27455
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 294  Q
    ||| |||||       ||||||||||||||||||||||||||||||||||||||| |||||||  || ||||||||| |||||||||||   ||||||||    
27326 aat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca 27424  T
295 ctctctcttataaataggagaatacaaacacta 327  Q
     ||||||||  ||||||| |||||| |||||||    
27425 -tctctctt-gaaataggtgaatactaacacta 27455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 4130401 - 4130173
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca 4130303  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 294  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||   |||||||     
4130302 aataaaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattacc- 4130205  T
295 ctctctcttataaataggagaatacaaacacta 327  Q
    |||||||||  |||||||| ||||| |||||||    
4130204 ctctctctt-gaaataggacaatactaacacta 4130173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 46191546 - 46191319
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca 46191449  T
196 aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca 294  Q
    ||| |||||       ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || ||||||||   |||||||     
46191448 aat-aaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc- 46191351  T
295 ctctctcttataaataggagaatacaaacacta 327  Q
    |||||||||  |||||||||||||| |||||||    
46191350 ctctctctt-gaaataggagaatactaacacta 46191319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
101 ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |    
30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaat-a 30697217  T
201 agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag 283  Q
    ||||       ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
30697218 aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 364786 - 364683
Alignment:
96 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| ||||| ||||||| |||||| |||||  ||| |||||||| ||| ||||||| |||||  || ||||||||| ||||||| ||| ||||| |||     
364786 tgtttggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaata-tttacgttgaatccccttaacc 364688  T
196 aataa 200  Q
    |||||    
364687 aataa 364683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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