View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4080_low_5 (Length: 238)
Name: NF4080_low_5
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4080_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53174802 - 53174581
Alignment:
| Q |
1 |
ttgtcatagaaatgatgttttggtatcaaaacatgaaatgnnnnnnngggttgttaatagtatatgaaaatcttgttatattgtagatgaaaagttggct |
100 |
Q |
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| T |
53174802 |
ttgtcatagaaatgatgttttggtatcaaaacatgaaatgaaaaaaagggttgttaatagtatatgaaaatcttgttatattgtagatgaacagttggct |
53174703 |
T |
|
| Q |
101 |
cctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcacaaaggttgcaagaggagaataatccatagagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53174702 |
cctttagattggaaaacaagacataaaatagttgttgggacagcgcgtggacttcactacttgcacaaaggttgcaagaggagaataatccatagagata |
53174603 |
T |
|
| Q |
201 |
tcaaggcatcaaacattttatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53174602 |
tcaaggcatcaaacattttatt |
53174581 |
T |
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