View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4080_low_6 (Length: 227)
Name: NF4080_low_6
Description: NF4080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4080_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 26579185 - 26579081
Alignment:
| Q |
122 |
aatatctaataaaatttatagttcttcaattctttttaaatttatgtatgttactggnnnnnnncaatattgttatttttcaatgtttttaaattttagt |
221 |
Q |
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| T |
26579185 |
aatatctaataaaaattatagttcttcaattctttttaaatt-atgtatgttactggaaaaaaacaatattgttatttttcaatgtttttaaattttagt |
26579087 |
T |
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| Q |
222 |
ctatat |
227 |
Q |
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|||||| |
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| T |
26579086 |
ctatat |
26579081 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 26579301 - 26579239
Alignment:
| Q |
6 |
aaagacaagtacgtcagtgctagaatgctaataagtcctaattcattttcaagtcatctacta |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579301 |
aaagacaagtacgtcagtgctagaatgctaataagtcctaattcattttcaagtcatctacta |
26579239 |
T |
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