View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_1 (Length: 845)
Name: NF4081_high_1
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 19 - 832
Target Start/End: Original strand, 42592940 - 42593753
Alignment:
| Q |
19 |
actgtgaacacatttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccacc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42592940 |
actgtgaacacatttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccacc |
42593039 |
T |
|
| Q |
119 |
cacttggttagagtccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaagtaaacaaac |
218 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42593040 |
ctcttggttagaatccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaaggaaacaaac |
42593139 |
T |
|
| Q |
219 |
gaattggacataggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactggacatgtttctgattcct |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42593140 |
gaattggacataggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactggacatgtttctgattcct |
42593239 |
T |
|
| Q |
319 |
caaccttgttgatatctgtctccgcctcccctatccaaattttgttaacttccattggttttgatattatctcgccagatacatcgatgcagatgacagt |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42593240 |
caaccttgttgatatctgtctccgcctcccctatccaaattttgttaacttccattggttttgatattatctcgccagatacatcgatgcagatgacagt |
42593339 |
T |
|
| Q |
419 |
taccaaccccattgttgtacaaattgacaaatcattaagaacggcttcttgatccgacactaccttatcattctggtaatggagagaaagagtaaccata |
518 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42593340 |
taccaaccccattgttgtacaagttgacaaatcattaagaacggcttcttgatccaacactaccttatcattctggtaatggagagaaagagtaaccata |
42593439 |
T |
|
| Q |
519 |
attggcactccatgttgcacacacagtattacaacactaaaaagacctgccaaaatggaaatccttcctcgtggtctcgagaaaatattctcaaggagtt |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42593440 |
attggcactccatgttgcacacacagtattacaacactaaaaagacctgccaaaatggaaatccttcctcgtggtctcgagaaaatattctcaaggagtt |
42593539 |
T |
|
| Q |
619 |
gcgtcaataagccaactgaaacattattacctttaatatctggcaaccctcctccatccacatcttttttacatattaggcgaatgaacaacacaagtgc |
718 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42593540 |
gtgtcaataagccaactgaaacattattacctttaatatctggcaaccctcctccatccacatcttttttacatattaggcgaatgaacaacacaagtgc |
42593639 |
T |
|
| Q |
719 |
aacaagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttctcaattagactttccaaaagtgctcnnnnnnnaggatgataccccatt |
818 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42593640 |
aacaagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttctcaattagactttccaaaagtgctctttttttaggatgataccccatt |
42593739 |
T |
|
| Q |
819 |
gagcccttcatctc |
832 |
Q |
| |
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|||||||||||||| |
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| T |
42593740 |
gagcccttcatctc |
42593753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 22 - 790
Target Start/End: Complemental strand, 4091835 - 4091082
Alignment:
| Q |
22 |
gtgaacacatttccaatattgtggatgcagccccactccagtgcaagtgcataacttgttcattgtccctaacgtttctcaccaaaactccaccacccac |
121 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||| | | ||| | | ||||||||||||||| ||| | |
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| T |
4091835 |
gtgaacacgtttccaatattgtggatgcagaaccactccagtgcaaatgcagaacttgttcagtacctaaaacttctttcaccaaaactccacttccccc |
4091736 |
T |
|
| Q |
122 |
ttggttagagtccagtttgccatgttcaagaatgtgaaaattttctctgaaagattcaatgtccatttcccatgttttttctgccaagtaaacaaacgaa |
221 |
Q |
| |
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|| || ||| | ||||||| ||| | || ||||| ||| ||||| ||||||| | | |||||||||| || || |||||||| | |||||| | | |
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| T |
4091735 |
tttgtcagaattcagtttgttatgcttaaaaatgtcaaatctttctatgaaagaattagtgtccatttcacactttgtttctgcccaagaaacaagtgca |
4091636 |
T |
|
| Q |
222 |
ttggacataggcgaaggagacagtcttgatgcaagaactgataaagcaactccttgtttaagcttgtcaagtacaactggacatgtttctgattcctcaa |
321 |
Q |
| |
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||||| | || ||| |||||||| || || || || |||||| ||||||||| ||||||||||||||| ||||||| |||| || |||||| |
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| T |
4091635 |
ctggacctcggagaaagagacagttctggtgaaataatcgataaaacaactccttctttaagcttgtcaagcacaactg------tttcggaaccctcaa |
4091542 |
T |
|
| Q |
322 |
ccttgttgatatctgtctccgcctcccctatccaaattttgttaacttccattggttttgatattatctcgccagatacatcgatgcagatgacagttac |
421 |
Q |
| |
|
| | || ||||||||| ||||||| ||||| |||| | || ||||||||||| || || | | ||||||||||| | ||||||||||||||| |
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| T |
4091541 |
cttcacaaatttctgtctccccctcccccatccagatttcactgacctccattggtttagaaataagcctaccagatacatcaacgcagatgacagttac |
4091442 |
T |
|
| Q |
422 |
caaccccattgttgtacaaattgacaaatcattaagaacggcttcttgatccgacactaccttatcattctggtaatggagagaaagagtaaccataatt |
521 |
Q |
| |
|
||||||||| ||||||||| || |||||||||| ||| ||||||| || | |||||| | || | | |||||||||||||||| |||||||||| | |
|
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| T |
4091441 |
caaccccatggttgtacaagcagataaatcattaaaaacagcttcttcgtctggcactacatcattaatgtggtaatggagagaaaaagtaaccatacgt |
4091342 |
T |
|
| Q |
522 |
ggcactccatgttgcacacacagtattacaacactaaaaagacctgccaaaatggaaatccttcctcgtggtctcgagaaaatattctcaaggagttgcg |
621 |
Q |
| |
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|||| ||||||||||||| ||| |||| || | |||||| || ||| | ||||||||||||||||| ||||||| | ||||||||||||||||||| | |
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|
| T |
4091341 |
ggcattccatgttgcacaaacaatattgcagctgtaaaaacacatgctagaatggaaatccttcctcttggtctcaacaaaatattctcaaggagttcca |
4091242 |
T |
|
| Q |
622 |
tcaataagccaactgaaacattattacctttaatatctggcaaccctcctccatccacatcttttttacatattaggcgaatgaacaacacaagtgcaac |
721 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||||| || | ||||| ||||||||| ||| ||| || ||||||||| ||||| |||||| |
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| T |
4091241 |
tcaacaagccaactgaaa---------ctttcatatctggcaatccatcaccatctccatctttttcacaaatttggtgaatgaacaccacaaatgcaac |
4091151 |
T |
|
| Q |
722 |
aagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttctcaattagactttccaaaag |
790 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4091150 |
caatgtaaagataaaaagagaagctttgtcaaggtaggaaatcggcttctcaattagtttttccaaaag |
4091082 |
T |
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