View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_high_12 (Length: 377)

Name: NF4081_high_12
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_high_12
NF4081_high_12
[»] chr8 (9 HSPs)
chr8 (13-312)||(41805817-41806116)
chr8 (16-162)||(41799488-41799633)
chr8 (312-375)||(38757331-38757395)
chr8 (162-259)||(41799727-41799824)
chr8 (329-369)||(28644850-28644890)
chr8 (343-377)||(30405651-30405685)
chr8 (344-376)||(30405629-30405661)
chr8 (344-376)||(30410149-30410181)
chr8 (312-377)||(30410105-30410171)
[»] chr5 (4 HSPs)
chr5 (312-369)||(30695594-30695651)
chr5 (213-283)||(278834-278904)
chr5 (312-354)||(40367386-40367427)
chr5 (312-354)||(40371549-40371590)
[»] chr2 (5 HSPs)
chr2 (311-377)||(8055698-8055763)
chr2 (329-377)||(12999289-12999338)
chr2 (312-377)||(8051180-8051247)
chr2 (312-352)||(6463228-6463267)
chr2 (337-369)||(12999309-12999341)
[»] chr7 (6 HSPs)
chr7 (312-377)||(27757188-27757252)
chr7 (312-377)||(22901508-22901573)
chr7 (337-377)||(22901497-22901537)
chr7 (312-377)||(27761702-27761767)
chr7 (311-377)||(7939807-7939875)
chr7 (312-377)||(7944385-7944452)
[»] chr3 (2 HSPs)
chr3 (311-377)||(21850505-21850574)
chr3 (312-377)||(21847415-21847483)
[»] chr4 (4 HSPs)
chr4 (312-377)||(44147348-44147414)
chr4 (312-377)||(44151859-44151925)
chr4 (323-369)||(31670379-31670425)
chr4 (310-376)||(53722313-53722380)
[»] chr1 (5 HSPs)
chr1 (312-377)||(26311801-26311868)
chr1 (310-365)||(16588275-16588329)
chr1 (312-366)||(39794198-39794250)
chr1 (312-366)||(39796802-39796854)
chr1 (312-353)||(26316307-26316348)
[»] scaffold0440 (1 HSPs)
scaffold0440 (312-377)||(7836-7902)
[»] chr6 (4 HSPs)
chr6 (311-366)||(8315266-8315319)
chr6 (312-366)||(8319806-8319858)
chr6 (312-354)||(27535334-27535375)
chr6 (337-369)||(17886696-17886728)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 41805817 - 41806116
Alignment:
Q  13 caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccacta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41805817 caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgctgggttaacatgtcccacta 41805916  T
Q  113 tcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcagtgatagttaacttgattaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41805917 tcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcagtgatagttaacttgattaat 41806016  T
Q  213 taagtcttcttattccataaaggacttggtcttgtatagaggctctggggatcagtagcaggacctctactgatgctgagaaccaggatgtgtattctct 312  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41806017 taagtcttcttattccataaaggacttgctcttgtatagaggctctggggatcagtagcaggacctctactgatgctgagaaccaggacgtgtattctct 41806116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 41799488 - 41799633
Alignment:
Q  16 agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatca 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||| | ||||||||||| ||| |    
T  41799488 agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtcccattatta 41799587  T
Q  116 aaattttccagttcttacccgtctttgatgctttttattttacattt 162  Q
    || ||| ||| |||||||||||||||||||| |||||||||||||||    
T  41799588 aattttgccaattcttacccgtctttgatgc-ttttattttacattt 41799633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 38757395 - 38757331
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagc-tagttcagaagcagttcagaag 375  Q
    ||||||||||||||||||||||||||||||| ||||||||||    |||||||||||||||||||    
T  38757395 tgatagcgcagaaaaaccagaagcggaagcttgttcagaagcactcttcagaagcagttcagaag 38757331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 41799727 - 41799824
Alignment:
Q  162 ttatcatatatttctagaaactagctagcagtgatagttaacttgattaattaagtcttcttattccataaaggacttggtcttgtatagaggctctg 259  Q
    |||||||| |||  |||||||||||| |||  ||||||||||||||||| |||||| ||||||||||  | |||||||  ||||| |||||| |||||    
T  41799727 ttatcatagattattagaaactagcttgcaacgatagttaacttgattagttaagtgttcttattccgcataggacttactcttgcatagagactctg 41799824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 28644890 - 28644850
Alignment:
Q  329 cagaagcggaagctagttcagaagctagttcagaagcagtt 369  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  28644890 cagaagcggaagctagttcagaagcgagttcagaagcagtt 28644850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 30405651 - 30405685
Alignment:
Q  343 agttcagaagctagttcagaagcagttcagaagca 377  Q
    |||||||||||||||||||||||||||||||||||    
T  30405651 agttcagaagctagttcagaagcagttcagaagca 30405685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 30405629 - 30405661
Alignment:
Q  344 gttcagaagctagttcagaagcagttcagaagc 376  Q
    |||||||||||||||||||||||||||||||||    
T  30405629 gttcagaagctagttcagaagcagttcagaagc 30405661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 30410149 - 30410181
Alignment:
Q  344 gttcagaagctagttcagaagcagttcagaagc 376  Q
    |||||||||||||||||||||||||||||||||    
T  30410149 gttcagaagctagttcagaagcagttcagaagc 30410181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 30410105 - 30410171
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagc-tagttcagaagc-agttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||||||||||||||   |||||||||| ||||||||||||    
T  30410105 tgatagcgcagaaaatc-agaagcggaagctagttcagaagcactgttcagaagctagttcagaagca 30410171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 30695651 - 30695594
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagcagtt 369  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30695651 tgatagcgcagaaaaaccagaagcggaagcttgttcagaagctagttcagaagcagtt 30695594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 278904 - 278834
Alignment:
Q  213 taagtcttcttattccataaaggacttggtcttgtatagaggctctggggatcagtagcaggacctctact 283  Q
    ||||| || |||||||| ||| |||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  278904 taagtgttgttattccacaaaagacttactcttgcatagaggctctgtggatcagtagcaggacctctact 278834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 40367386 - 40367427
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagct 354  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  40367386 tgatagcgcagaaaa-ccagaagcggaagcttgttcagaagct 40367427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 40371549 - 40371590
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagct 354  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  40371549 tgatagcgcagaaaa-ccagaagcggaagcttgttcagaagct 40371590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 8055763 - 8055698
Alignment:
Q  311 ctgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagcagttcagaagca 377  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8055763 ctgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagttcagaagcagttcagaagca 8055698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 12999289 - 12999338
Alignment:
Q  329 cagaagcggaagctagttcagaagctagttcagaagc-agttcagaagca 377  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  12999289 cagaagcggaagctagtccagaagctaattcagaagctagttcagaagca 12999338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 8051247 - 8051180
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagcta-gttcagaagc--tagttcagaagcagttcagaagca 377  Q
    ||||||||||||||| | |||||||||||||  ||||||||||  | ||||||||||||||||||||||    
T  8051247 tgatagcgcagaaaatc-agaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagca 8051180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 6463228 - 6463267
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaag 352  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  6463228 tgatagcgcagaaaa-ccagaagcggaagcttgttcagaag 6463267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 12999309 - 12999341
Alignment:
Q  337 gaagctagttcagaagctagttcagaagcagtt 369  Q
    ||||||| |||||||||||||||||||||||||    
T  12999309 gaagctaattcagaagctagttcagaagcagtt 12999341  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 27757252 - 27757188
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagcagttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27757252 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagttcagaagcagttcagaagca 27757188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 22901573 - 22901508
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagc-agttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||||| |||||| |||| |||||||    
T  22901573 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagtttagaagctagttaagaagca 22901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 22901537 - 22901497
Alignment:
Q  337 gaagctagttcagaagctagttcagaagcagttcagaagca 377  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  22901537 gaagctagtttagaagctagttaagaagcagttcagaagca 22901497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 27761767 - 27761702
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca--gttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  27761767 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagc-agttcagaagcactgttcagaagca 27761702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 7939807 - 7939875
Alignment:
Q  311 ctgatagcgcagaaaaaccagaagcggaagcta-gttcagaagc--tagttcagaagcagttcagaagca 377  Q
    |||||||||||||||| | |||||||||||||  ||||||||||  | ||||||||||||||||||||||    
T  7939807 ctgatagcgcagaaaatc-agaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagca 7939875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 7944385 - 7944452
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagcta-gttcagaagc--tagttcagaagcagttcagaagca 377  Q
    ||||||||||||||| | |||||||||||||  ||||||||||  | ||||||||||||||||||||||    
T  7944385 tgatagcgcagaaaatc-agaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagca 7944452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 21850574 - 21850505
Alignment:
Q  311 ctgatagcgcagaaaaaccagaagcggaagctagttcagaagct-agttcagaagca--gttcagaagca 377  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||||||    
T  21850574 ctgatagcgcagaaaaaccagaagcggaagcttgttcagaagctctgttcagaagcactgttcagaagca 21850505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 21847483 - 21847415
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagct-agttcagaagca--gttcagaagca 377  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||||||    
T  21847483 tgatagcgcagaaaaaccagaagcggaagcttgttcagaagctctgttcagaagcactgttcagaagca 21847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 44147414 - 44147348
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca--gttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  44147414 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagttcagaagcactgttcagaagca 44147348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 44151925 - 44151859
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca--gttcagaagca 377  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  44151925 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagttcagaagcactgttcagaagca 44151859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 31670425 - 31670379
Alignment:
Q  323 aaaaaccagaagcggaagctagttcagaagctagttcagaagcagtt 369  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31670425 aaaaatcagaagcggaagctagttcagaagttagttcagaagcagtt 31670379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 53722380 - 53722313
Alignment:
Q  310 tctgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca--gttcagaagc 376  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  |||| ||||||  ||||||||||    
T  53722380 tctgatagcgcagaaaa-ccagaagcggaagcttgttcagaagcaggttctgaagcactgttcagaagc 53722313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 26311868 - 26311801
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagc-tagttcagaagc-agttcagaagca 377  Q
    |||| |||||||||||||||||||||||||| ||||||||||   |||||||||| ||||||||||||    
T  26311868 tgattgcgcagaaaaaccagaagcggaagcttgttcagaagcactgttcagaagctagttcagaagca 26311801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 16588275 - 16588329
Alignment:
Q  310 tctgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagc 365  Q
    ||||||||| ||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  16588275 tctgatagcacagaaaa-ccagaagcggaagcttgttcataagcttgttcagaagc 16588329  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 39794250 - 39794198
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca 366  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||    
T  39794250 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagc-agttcagaagca 39794198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 39796854 - 39796802
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca 366  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||    
T  39796854 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagc-agttcagaagca 39796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 26316348 - 26316307
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagc 353  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  26316348 tgatagcgcagaaaaaccagaaacggaagcttgtttagaagc 26316307  T

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Target: scaffold0440 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 7902 - 7836
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca--gttcagaagca 377  Q
    |||||||||||||||   ||||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  7902 tgatagcgcagaaaatt-agaagcggaagcttgttcagaagcaagttcagaagcactgttcagaagca 7836  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 8315266 - 8315319
Alignment:
Q  311 ctgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca 366  Q
    |||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||    
T  8315266 ctgatagcgcagaaaatc-agaagcggaagcttgttcagaagc-agttcagaagca 8315319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 8319806 - 8319858
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagctagttcagaagca 366  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||    
T  8319806 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagc-agttcagaagca 8319858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 27535334 - 27535375
Alignment:
Q  312 tgatagcgcagaaaaaccagaagcggaagctagttcagaagct 354  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  27535334 tgatagcgcagaaaa-ccagaagcggaagcttgttcagaagct 27535375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 17886696 - 17886728
Alignment:
Q  337 gaagctagttcagaagctagttcagaagcagtt 369  Q
    ||||| |||||||||||||||||||||||||||    
T  17886696 gaagcaagttcagaagctagttcagaagcagtt 17886728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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