View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_13 (Length: 370)
Name: NF4081_high_13
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 5678951 - 5678686
Alignment:
| Q |
1 |
gtacatctccattcttgtatattgcccttcctttcatttcataatgtctataataccactcatattccttcctctaccctccagagaattacctttcttc |
100 |
Q |
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| T |
5678951 |
gtacatctccattcttgtatattgcccttcctttcatttcataatgtctataataccactcatattccttcctctaccctccagagaattacctttcttc |
5678852 |
T |
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| Q |
101 |
tagataagaagaccttgtttgggaaattcacaaggtcaaatatttcttggattaacattgcatacaaatttatttgatttgaggttcaaattctaagtac |
200 |
Q |
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| T |
5678851 |
tagataagaagaccttgtttgggaaattcacaaggtcaaatatttcttggattaacattgcatacaaatttatttgatttgaggttcaaattctaagtac |
5678752 |
T |
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| Q |
201 |
tctatcctcattattccctaaaacttttcaactcaactagcatttaagacttgatgttcttatttc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678751 |
tctatcctcattattccctaaaacttttcaactcaactagcatttaagacttgatgttcttatttc |
5678686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 5678634 - 5678598
Alignment:
| Q |
318 |
ggtccttgagcctatactataactgactcattaatct |
354 |
Q |
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| T |
5678634 |
ggtccttgagcctatactataactgactcattaatct |
5678598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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