View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_21 (Length: 328)
Name: NF4081_high_21
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 778776 - 778618
Alignment:
| Q |
19 |
ccaactaccatcatcaaaaacacaatgtcatcattatccttaccctccaactaccaattatatctctttctcaaggctaaataacaaccaaaatattagg |
118 |
Q |
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| T |
778776 |
ccaactaccatcatcaaaaacacaatgtcatcattatccttaccctccaactaccaattatatctctttctcaaggctaaataacaaccaaaatattagg |
778677 |
T |
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| Q |
119 |
ctcctcagctttgatgataaagccatcaaaaccaacaaagtaagcttgctggttgagaa |
177 |
Q |
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| T |
778676 |
ctcctcagctttgatgataaagccatcaacaccaacaaagtaagcttgttggttgagaa |
778618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 778586 - 778442
Alignment:
| Q |
175 |
gaaccaatgttttcattttgnnnnnnnncatgaatatgaatagacccagattctaaacctaaatctggaagaataaaaacagataaggaaccctctttaa |
274 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
778586 |
gaaccaatgttttcattttgaaaaaaagcatgaatatgaatagacccagattctaaacctaaatctggaagaataaaaacagataaggaaccctctttaa |
778487 |
T |
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| Q |
275 |
tgttcactgtactgactttgagttcgatttctcattttcctttgc |
319 |
Q |
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| T |
778486 |
tgttcattgtactgactttgagttcgatttctcattttcctttgc |
778442 |
T |
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