View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_27 (Length: 296)
Name: NF4081_high_27
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 18101708 - 18101483
Alignment:
| Q |
28 |
ggtggtgtagtgttgtttaggaccaagttaaccaaccaaattatatatcattatccaaaaagaatataaaaacagagacttgaagacagacattgattca |
127 |
Q |
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| T |
18101708 |
ggtggtgtagtgttgtttaggactaagttaaccaaccaaattatatatcattatccaaaaagaatataaaaacaaagacttgaagacagacattgattca |
18101609 |
T |
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| Q |
128 |
tagatgtatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101608 |
tagatgtatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatg |
18101509 |
T |
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| Q |
228 |
atgaagaaataacaatgacacacaag |
253 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18101508 |
atgaagaaataacaatgacacacaag |
18101483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 37859316 - 37859091
Alignment:
| Q |
28 |
ggtggtgtagtgttgtttaggaccaagttaaccaaccaaattatatatcattatccaaaaagaatataaaaacagagacttgaagacagacattgattca |
127 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37859316 |
ggtggtgtagtgttgtttaggactaagttaaccaaccaaattatatatcattatccaaaaagaatataaaaacaaagacttgaagacagacattgattca |
37859217 |
T |
|
| Q |
128 |
tagatgtatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859216 |
tagatgtatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggtaaaatagtaaaataccacaaaatatg |
37859117 |
T |
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| Q |
228 |
atgaagaaataacaatgacacacaag |
253 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37859116 |
atgaagaaataacaatgacacacaag |
37859091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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