View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_4 (Length: 531)
Name: NF4081_high_4
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Complemental strand, 54820111 - 54819626
Alignment:
| Q |
32 |
tagacaatctagctatgattgactaaatcatagatatgagaatgtttagctaaagactaagttgttaaaatttattttttacatgactaaaaattgttat |
131 |
Q |
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| T |
54820111 |
tagacaatctagctatgattgactaaatcatagatatgaaaatgtttagctaaagactaagttgttaaa-tttattttttacatgactaaaaattgtt-t |
54820014 |
T |
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| Q |
132 |
tatttaaggattaaatt-agcttcacannnnnnnn-caagcaccacaaacgatcttcactctatttatatag--agtgaacgcccaatttgatcacttgc |
227 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
54820013 |
tatttaaggattaaattgagcttcacatttttttttcaagcaccacaaatgatcttcactctatttatatagcgagtgaacgcccaatttgatcactcgc |
54819914 |
T |
|
| Q |
228 |
aattttttcgtggctcaatttagtctttgacgaaaataaaatcaaaagttgttcattacattttttatatcagagacaattagtctttgattcattatga |
327 |
Q |
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| T |
54819913 |
aattttttcgtggctcaatttaatctttgacgaaaataaaatcaaaagttgttcattacattttttatatcagagacaattagtctttgactcattatga |
54819814 |
T |
|
| Q |
328 |
gagactgagagagactaatttgtttcgtgcgcagtnnnnnnntgtcaaagaatactttaagttttaattttgtcaaggctaaattgaactgcgataaaac |
427 |
Q |
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||||||||||||||||||||||||| || |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54819813 |
gagactgagagagactaatttgttttgtccgcagtgcaaaaatgtcagaaaatactttaagttttaattttgtcaaggctaaattgaactgtgataaaac |
54819714 |
T |
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| Q |
428 |
tatgaaggaccaaattgaatctttcatcatgtgtgtttactaatgttccttcatacaataacttggattattttggtccctagatact |
515 |
Q |
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| T |
54819713 |
tatgaaggaccaaattgaatctttcatcatgtgtgtatactaatgttccttcatacaataacttggattattttggtccctagatact |
54819626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 54848737 - 54848678
Alignment:
| Q |
454 |
tcatgtgtgtttactaatgttccttcatacaataacttggattattttggtccctagata |
513 |
Q |
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||||| |||| ||||||||||||||| ||| ||||||| |||||||||||| |||||||| |
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| T |
54848737 |
tcatgagtgtatactaatgttccttcgtaccataactttgattattttggttcctagata |
54848678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Original strand, 35800968 - 35801008
Alignment:
| Q |
473 |
ttccttcatacaataacttggattattttggtccctagata |
513 |
Q |
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| T |
35800968 |
ttccttcctaccataacttggattattttggtccctagata |
35801008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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