View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_5 (Length: 479)
Name: NF4081_high_5
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 37673272 - 37672822
Alignment:
| Q |
20 |
acatcttcaattggaatttacctagttttatttaacctcaatggaaattttgtttatgtactgtgaagtgtgaacctattggaaattttattggactaaa |
119 |
Q |
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| T |
37673272 |
acatcttcaattggattttacctagttttatttaacctcaatggaaattttgtttatgtactgtgaagtgtgaacctattggaaattttattggactaaa |
37673173 |
T |
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| Q |
120 |
tcttgtttaccgaataggctcaaaattaccgcaaattcaacttacttatctcacaaaattccttgtcaagtaataataattcattaacaaattcaaaacc |
219 |
Q |
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| T |
37673172 |
tcttgtttaccgaataggctcaaaattaccgcaaattcaacttacttatctcacaaaattccttgtcaagtaataataattcattaacaaattcaaaacc |
37673073 |
T |
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| Q |
220 |
aaagaagggcagcttgcaatgagtaatagaacaatcagaatgcaccatgttttcattaagtcaattttcattaatagaaacacatactttaaagatatta |
319 |
Q |
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| T |
37673072 |
aaagaagggcagcttgcaatgagtaatagaaaaatcagaatgcaccatgttttcattaagtcaattttcattaatagaaacacatactttaaagatatta |
37672973 |
T |
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| Q |
320 |
ttaaactgtaaaacacaaaatgaaactagaaatctactactattatacatctttttgaacaggtaaacccaaaaattaattttagtacatagtattttgt |
419 |
Q |
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| T |
37672972 |
ttaaactgtaaaacacaaaatgaaactagaaatgtactactattatacat-tttttgaacaggtaaacccaaaaattaattttagtacatagtattttgt |
37672874 |
T |
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| Q |
420 |
cactt--tgtctttattacccaattgtctttcactttcttcaatcacctttg |
469 |
Q |
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| T |
37672873 |
cactttgtgtttttattacccaattgtctttcactttcttcaatcacctttg |
37672822 |
T |
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